Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq119 93.3 5e-14 seq98 93.3 5e-14 seq23 93.3 5e-14 seq226 89.7 6e-13 seq299 87.8 2e-12 seq102 86.0 7e-12 seq84 82.4 9e-11 >seq119 Length=9167744 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 360939 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 360881 >seq98 Length=10222197 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 5778137 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 5778195 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 5844804 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 5844746 >seq23 Length=20549582 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 19582374 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 19582432 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 19727983 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 19728041 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/64 (91%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT- 136775 |||||||||||||||||| |||||||| ||||| |||||||| ||||||||| |||||| Sbjct 19735772 TAGCTCAGTTGGTTAGAGTGTGGTGCTAATAACACCAAGGTCGCGGGTTCGATCCCCGTA 19735831 Query 136776 TGGG 136779 |||| Sbjct 19735832 TGGG 19735835 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||| |||||| ||||||||| |||||| Sbjct 19579269 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGTCAAGGTTGCGGGTTCGATCCCCGT 19579211 >seq226 Length=3379998 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||||||||||||| |||||||| |||||||||||||| ||||||||| |||||| Sbjct 2266846 TAGCTCAGTTGGTTAGAGTGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 2266788 >seq299 Length=1754668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 183/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 158464 CTACCCCCAGGATGTTATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGT 158523 || ||| | || || ||||| ||||| || || ||||| ||||||| || |||| Sbjct 1493355 CTTCCCTCTGGGTGCTATGGCACAGTGGCTCCACGCTCGGGCTTGGCTGCCAAACACTTC 1493414 Query 158524 ATCAACGTTGGTGCGGGGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTC 158583 || | || || || |||||||| ||| || || | ||||| || |||| || Sbjct 1493415 ATAGATGTCGGAGCTGGGGTCATAGATGAAGACTACAGAGGAGATGTTGGTGTCGCGCTT 1493474 Query 158584 TTCAATCATGGAGACAAGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTT 158643 || || || | || | ||||| || |||||||| ||||||||||| |||||| || Sbjct 1493475 TTTAACTTCGGCAAAGAGAAGTTTGAAGTGAAGAAGGGCGATCGCATCGCCCAGCTTATT 1493534 Query 158644 CTAGAAC-GTTGTGAGACGCCACCCATTGAGGAAATTAACATCGTCGAAGATACGGAGAG 158702 || | | | | || ||| || |||||| | | | | || |||||||| || Sbjct 1493535 TGTGAGCGGATCTACTAC-CCAGAGATAGAGGAAGTGCAGGGCTTGGATGATACGGAAAG 1493593 Query 158703 GGGTTCGGGTGGATTTGGTTCTACTGGCAA 158732 |||||| || || ||||| || ||||| || Sbjct 1493594 GGGTTCTGGAGGCTTTGGATCCACTGGGAA 1493623 >seq102 Length=10499097 Score = 86.0 bits (94), Expect = 7e-12 Identities = 182/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 158464 CTACCCCCAGGATGTTATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGT 158523 || ||| | || || ||||| ||||| || | ||||| ||||||| || |||| Sbjct 2805196 CTTCCCTCTGGGTGCTATGGCACAGTGGCTCCA-GCTCGGGCTTGGCTGCCAAACACTTC 2805138 Query 158524 ATCAACGTTGGTGCGGGGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTC 158583 || | || || || |||||||||||| ||||| | ||| | || || || || Sbjct 2805137 ATAGATGTCGGAGCTGGGGTCATCGATGAAGATTACAGAGGAAACGTTGGTGTTGTGCTG 2805078 Query 158584 TTCAATCATGGAGACAAGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTT 158643 || || ||| | || | ||||| || || ||||| || |||||||| |||||| || Sbjct 2805077 TTTAACTTTGGCAAAGAGAAGTTTGAAGTGAAAAAGGGCGACCGCATCGCCCAGCTTATT 2805018 Query 158644 CTAGAACGTTGTGAGACGCCACCCATTGAGGAAATTAACATCGTCGAAGATACGGAGAGG 158703 || || | | || ||| || |||||| | || | | || || ||||| ||| Sbjct 2805017 TGTGAGCGATCTACTAC-CCAGAGATAGAGGAAGTGCACGGCTTGGATGACACGGAAAGG 2804959 Query 158704 GGTTCGGGTGGATTTGGTTCTACTGGCAA 158732 ||||| || || ||||| || ||||| || Sbjct 2804958 GGTTCTGGAGGCTTTGGATCGACTGGGAA 2804930 >seq84 Length=11882382 Score = 82.4 bits (90), Expect = 9e-11 Identities = 201/292 (69%), Gaps = 12/292 (4%) Strand=Plus/Plus Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGT 11742 || ||||||||||| ||||||| |||||| || || | | || | || ||| || Sbjct 856249 GCATCAATCTCATCAATGAATAAGATACAAGG-TGCATTTTTCCTGGCCATTACAAACGT 856307 Query 11743 -TCACGTACAC--GCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 |||||||| | ||| | |||||||| || ||| |||| | ||| | | | | Sbjct 856308 GTCACGTACCCTTGCT--GGCCCAACACCAACAAACCTCTCTAGGAACTCCG-ACCCGTT 856364 Query 11800 CACTG-AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 ||| | ||||||||| || | | ||| ||||| ||||||| ||||| || ||||| || Sbjct 856365 CACGGTAATGAAGGGCACGCTGGCCTCCCCAGCCATGGCTCTGGCGAGAAGCGTCTTGCC 856424 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-ACTTCCAAAGT 11917 |||||||| || || ||| | ||| || ||||| ||||| || ||| | | Sbjct 856425 GGTACCAGGGTGACAAGTGAGCATGGCTCCCTTTGGGATTTTGGCTCCTGAGTCCTGA-T 856483 Query 11918 AGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | ||| || ||||| |||| | ||||| |||| || |||| |||||| Sbjct 856484 ACTGCTTGGGGTTCTT-CGGAA-TTCACAAACTCCATAATTTCCAGCTTGGC 856533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588923470703000