Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq80 86.0 7e-12 >seq80 Length=11829778 Score = 86.0 bits (94), Expect = 7e-12 Identities = 166/240 (69%), Gaps = 10/240 (4%) Strand=Plus/Plus Query 9364 TTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTT 9423 ||||||| || ||| ||||||||||||||| || || | ||| | || || | Sbjct 137783 TTCCCACTGCGTCAGTCTCATCAATGAAGAGGATGCAAGAGGCATTCTTCCGAGCAAGGG 137842 Query 9424 CAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--C 9481 |||| || || || |||| | ||||||||||||||||||||| | ||| | | | Sbjct 137843 CAAATAGGTCTCGCACCCGAGCCGGGCCCACACCAACAAACATCTCGAGAAACTCAGACC 137902 Query 9482 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGG-CTCG-----GGCGAG 9535 | | ||| | |||||||||||| || | ||| || || ||| || | ||| | Sbjct 137903 CACTG-ACAGT-GATGAAGGGGACTTTGGCTTCCCCAGCCGTGGCCTTGGCCTTGGCCAA 137960 Query 9536 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 || ||||| || || || || ||||| ||| | ||||||| |||||| ||||| || Sbjct 137961 TAGTGTCTTCCCAGTGCCAGGAGGACCCGTGAGAATGGCACCCTTTGGAATTTTGGCTCC 138020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589928181087400