Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq288 387 2e-102 seq187 233 2e-56 seq151 105 8e-18 seq146 95.1 1e-14 seq6919 84.2 2e-11 >seq288 Length=2168581 Score = 387 bits (428), Expect = 2e-102 Identities = 882/1332 (66%), Gaps = 10/1332 (1%) Strand=Plus/Plus Query 47485 GTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTT 47544 ||||||| ||||| || |||| |||| ||||||||| | ||||| ||||| ||||||| Sbjct 510247 GTTTCCAGTCCCACAGGTCTGTGGGAATAACATTCCACATGTCATACTGAAGGATTCCTT 510306 Query 47545 TACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAAC 47604 | |||| ||| | || | ||| ||| ||| || || || || || ||||| | Sbjct 510307 TGCTTACTGGACAGCCTTCATAGATTTCATATGGGCCAAGCTCCTTGGCTAGCTCACAGC 510366 Query 47605 TTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTG-CT 47663 | ||||||| || | |||||| || ||||||| |||| | | |||| || || | | Sbjct 510367 TGGCTTCCAGGGCTCCATAATAAATAGTTTCAAGGATTTATTTATTTA-ATAACTGGGCC 510425 Query 47664 TCTGATGAT-TCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACC 47722 ||| || | ||||||||||| || |||||| ||| ||||| || || Sbjct 510426 TCT-ATACTCTCAAAAGGATATCTCATCAGGATAAAGGTATCTACCAGCCCTTGTACTCC 510484 Query 47723 AATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTT 47782 ||| ||||| |||||||| |||||| || || | || ||||| | ||||| ||| Sbjct 510485 AATTCCAATGGGTCTATGGCATTTATTTGATAAATGTGCCTCTGGGACAGGATA---GTT 510541 Query 47783 TATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATT 47842 |||||| ||||||||||| | | | |||| ||||| | Sbjct 510542 TATATCGATAATTTTATTCAAATTTCGGACAATAGCTTTGGTGACTTCTGCCAATTTCTC 510601 Query 47843 AAAATCAAACTTGTTATTTA---TAACAAACCTATTAAGTGCTATAGATGCTAGATTACA 47899 ||| || | ||| | | ||||| || |||| || || | || || | ||||| Sbjct 510602 AAAGTCGTATGTGTGTTCTGGTGTAACATACATATTCAGGGCCAGGGAAGCCAAGTTACA 510661 Query 47900 TACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTT 47959 || || ||||||||| | ||||||| | |||||| | || || || | ||||| Sbjct 510662 AACTGCAACCTCATTTTTGCTGGTATATTCAACTATTTCTGTGCACAGGTTGCTGCATTT 510721 Query 47960 GATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAA 48019 ||| || |||| || || || || | ||||| | || ||||| ||||| | Sbjct 510722 GATTGTTCCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTA 510781 Query 48020 AGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTAT 48079 | || || | ||| ||||||| ||| |||| | | ||||| | ||| |||| Sbjct 510782 CAGGGTACCCGGCTCTGTCTGAGACTCAGTGATGGTGTACCAAAGCTGCTGAGCTTTTAC 510841 Query 48080 AACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCC 48139 ||| | | | | | | | ||| || | |||||||||||||||||| || || Sbjct 510842 AACTTTGCGAACATGACCTTGTTTTTCATAACTTTCATATAACTTCTCAAATTCCTCTCC 510901 Query 48140 ATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATT 48199 | || | ||| | |||||||| ||||| ||||||| ||| ||||| |||| || | | Sbjct 510902 CCAAACCTCATCCAGGCCAGGACACTCATTTGGACACAGCAAAGACCAGTCCTGATTAGT 510961 Query 48200 TTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCT 48259 | ||||| |||| || | || | |||||||| || | || | || ||| | | Sbjct 510962 CTCTACTCGTTTCATGAAGAGATTCAGAATCCAAAGGGCAAAGAAAAGATTCCTGGCACG 511021 Query 48260 TAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCA 48319 | ||||| || || | ||| |||| | |||||||| || | || || |||||| Sbjct 511022 CTGCTCTTCTTTTCCTGTGTTCTTTTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 511081 Query 48320 TGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCT 48379 || || | || || || | | | || || | || || || |||||||| | ||| | Sbjct 511082 AGGCTCCAGGTAAATAGCAAATGCCCCAGGGCACTTGTTTCCACCTTGATCAACATAACG 511141 Query 48380 GGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCC 48439 || || |||||||| ||||| | |||||| |||| ||||| || | |||||||| || Sbjct 511142 AGCTGTGTTGTTATACACTCTCAGCATTGGTACAAGGCCATTAGAATTGCCATTGGTCCC 511201 Query 48440 CGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCAT 48499 | || || || ||| |||| | ||| ||| | | | ||| || || || || Sbjct 511202 AGCTATGTAGCTGCCAGTAGCCCAAATACAACTCACAGTGACACCAATTCCTCCAGCGGA 511261 Query 48500 TTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTAT 48559 |||||| || | |||||| | || || || |||||||| ||||| | || |||||| | Sbjct 511262 TTTAGAAATCAATGCACACTGCTTCAGAGTGTCATAAATGCCTTCGGTGCTGTCATCTTT 511321 Query 48560 CATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGT 48619 |||| | | || ||||| || || | ||| || || | | ||| || | | Sbjct 511322 CATACTCAGAAGGAAACAGCTTGAAAGTTGTGGGCAGTTGGTACTAGCATTGAAGAGAGA 511381 Query 48620 TGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATC 48679 ||||| |||||| ||||||| |||| || | | || ||||||||||| ||| || Sbjct 511382 GGGAGAAGCATGAGTAAACCACTTCTGGGAAAGAAGGTTGTATGTTTCAATTGCAGCCTC 511441 Query 48680 TATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAAC 48739 ||| || || || || || | ||| || | ||| ||||||| || || |||||| | Sbjct 511442 TATGTCTTCTTTGTGAATCCCCACAGACACCCTCATCAACATATGCTGCGGCCTTTCAGC 511501 Query 48740 AATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTT 48799 | ||| ||| || ||||| | ||| || | |||| || ||||| ||||| || || Sbjct 511502 CACTTTTCCATTGATCTTCAACAAATAGGACCTCTCCAGAGTCTTAAAGCCAAAGTAATT 511561 Query 48800 GTATGAAAAGTC 48811 || || || || Sbjct 511562 ATAAGAGAAATC 511573 Score = 154 bits (170), Expect = 2e-32 Identities = 292/424 (69%), Gaps = 7/424 (2%) Strand=Plus/Plus Query 47011 TTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATAC 47070 |||| | |||||||||||| |||||||| ||| | | |||| ||||||| || ||| Sbjct 508942 TTGTCCTTAAATAATACATCCCAGTCTTCAAATCCAGCTTCCAAGCATAGAAGTGTGTAC 509001 Query 47071 TAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAA 47130 | || | || | || | || || | ||| || || || | | | || |||||||||| Sbjct 509002 TGGTGAGCTT-GTGTAGTTGGGCTCAGCAATGTGGATGTTCAAAAACTGGCTCTGATCAA 509060 Query 47131 TAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTG 47190 | || ||||| | |||||| ||||| | | | | | || | || |||||||||| Sbjct 509061 TGAAAGCACCACGATCAGCAGCCATCTTCAGGACAGTTTTCTGAGAGATTTCCCATACTG 509120 Query 47191 TTTTATAAATTTGTTTAATGTCTTCTGGGAGATT--AGTAT--TTTGAATAGATCCTCCg 47246 | ||||||| || || | ||| || |||| || | ||| | || ||||| || | Sbjct 509121 TCTTATAAAGCTGGTTCAGGTCATC-GGGAATTTCCACTATGCTCTGGATAGAGCCATTG 509179 Query 47247 ttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaatgttttt 47306 | ||||| | ||||| | ||| | ||| | || || || | ||| Sbjct 509180 CAGGCAATAATCTGATTTTTCATTTCTTCATTCCATAAGCCCCGCTCGGTAAGATCTTTC 509239 Query 47307 aaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTA 47366 || || |||||||| ||||| ||||||||||| |||| ||||| | | || || || Sbjct 509240 AATAG-TGAGGATTTACAATCTGAAATTCTCCTGATAAGACTCTTAGAGTGTAGATGTTG 509298 Query 47367 CTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGC 47426 || ||||| ||||| ||||| ||||| |||| || || ||||||||||| || |||| | Sbjct 509299 CTGGTATAAGGTTCAATAGACTCATTTTTTCTCAAGATCTGAGCAGTTGAAGCAGTAGTC 509358 Query 47427 ATGG 47430 |||| Sbjct 509359 ATGG 509362 >seq187 Length=5094135 Score = 233 bits (258), Expect = 2e-56 Identities = 609/916 (66%), Gaps = 27/916 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 |||||| ||| ||||| ||| |||||||||||| ||| |||| ||| |||||||| Sbjct 4783 TTAAAAGTCAGCATCCCAAGTAAAAGAATTCTC--CATAGGAATGGACATAACTCCCATA 4840 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| || ||||| | || |||||||| || || || || || || || ||| | Sbjct 4841 GTCTGATACTCACCAACTATCTTCTCAAAGAAGTTTGTCTTCCCTTCCAAAGAAATATTT 4900 Query 18730 -TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 || || || ||||||||||||| || | | || |||| |||| ||| | | Sbjct 4901 CTCTATGAAGTCAAATGGATTTTCCACTCGGAAAACCTTGCTGAAGCCTAGTTCCAGCAT 4960 Query 18789 TAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTATTA 18847 || || || || ||||| || || | ||| ||||||| || | ||||| || || Sbjct 4961 GAGCCTGTCAGCCACAAACTTGATGCACTGT-TTCATCAAATTGGAGTTCATCCCGATAG 5019 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATA 18906 || || || | | || || || || || || || || | || | |||| | | Sbjct 5020 GCTTCACCGGCAAGCCCTCCGTGAGGAACTCCTGCTCAATGCCGATGGCGT-TGATGACA 5078 Query 18907 ATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCA 18966 || || || | || || || | || || || ||||||| || | Sbjct 5079 ATCTCCCTCACCCTCTGCTCCAACGGCTTGTGCACCAGGTGCTTGAACATCAGGCACACG 5138 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 || |||||| | | ||||||| ||| || || | ||| || ||||| || | |||||| Sbjct 5139 AAGTCACAACGCAAGCCCTCGTATCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGC 5198 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 || || || | ||| || | |||||| || | ||||| || ||||||||||| || ||| Sbjct 5199 ATGAGGCCCCGTTTCTTGAGCCAGAAGATCAACGCAAAAGAACCAGAAAAGAAAATTCCT 5258 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCT-TTCTCCATAACTAGCATCATTATTATGAATCCA 19145 || || | |||| || || || | ||||||||| | || || || | ||||| Sbjct 5259 TCCACAGTGACAAAGGCCAC-CGTGTGTTCTCCATATGTGGCCTCTTTGTCCCCTATCCA 5317 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 || ||||| || |||||||| || ||||| | || ||||| | | ||| || || Sbjct 5318 GCGCAACGCCCAGTCTGCCTTCTTCTTCACACAGGCCACGGTCTCAGTGGCATTGAAGAG 5377 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | || | || | | |||| ||| || | || || | | |||||||||| || Sbjct 5378 AAACTCCCTTTCTTGGGAATCTCTAATGTAAGTGTCCATAAGGAGTGTGTACATTTCCGA 5437 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||| | ||||| || || ||||| || ||||| ||||| | |||||||| || || || Sbjct 5438 ATGCAGGTTTTCCATGGCAATCTGGAAGCCGTAGAAACACCGGGCTTCTGTAATTTGAAC 5497 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA- 19384 ||| ||||| || |||| ||| ||| | ||||| ||||| || || | ||||| Sbjct 5498 TTCTTGGTTAAATCGCTCCACCAGATTCTCACTGACTATGCCATCGCTGGCAGGAAAAAA 5557 Query 19385 ----ATGCTAATA---------CATGTTTAATAAAATGTTTTTCATCTGAG-GTTAATGT 19430 || ||||| |||| | ||| || || | || | || || | | Sbjct 5558 AAATATAATAATAAAAAGTTAGAATGTGTGATATAAAGTATCTCTCTTCAGCCTTCAGGG 5617 Query 19431 ATT-CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCT 19489 || ||| | | ||| ||||| || | ||| ||||| || |||||||||||||||||| Sbjct 5618 CTTCCCAGTGCTGAATGTCTTTGGAAAGATCGACTTCCTCCGCTGTCCAAAAAGAAGCCT 5677 Query 19490 CTGCTTTTTTATACAT 19505 | ||||| ||| |||| Sbjct 5678 CGGCTTTCTTACACAT 5693 >seq151 Length=7174217 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | ||| || ||||| || | |||||||| ||||||| ||| | Sbjct 1182556 CCTCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCTCGTTTCT 1182497 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || || ||||| || ||||||||||| || ||||| || || ||||| | Sbjct 1182496 TGAGCCAGAAGATTGACGCAAAAGAACCAGAAAAGAAGATGCCTTCCACAGCGGCAAAGG 1182437 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 1182436 CCACCACGCGTTCTCC 1182421 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| || | || || | | |||||||||||| ||||| || ||||| ||||| Sbjct 1180952 ATCTTTAATGTAAGTGTCAATAAGCAGACTGTACATTTCCGAATGTATGTTTTCCATAGC 1180893 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || ||||| ||||| | |||||||| || || ||||| Sbjct 1180892 AATCTGGAAGCCGTAGAAACAACGGGCTTCTGTAATTTGAACTTC 1180848 >seq146 Length=7541600 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || || || ||||| ||||| ||||| Sbjct 3726375 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATAGAC 3726316 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 || |||||||| || || ||||||||||| || |||||||| | |||| | || || Sbjct 3726315 TCGTTATTTCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAGACTG 3726256 Query 47448 TTTCTTA 47454 ||||||| Sbjct 3726255 TTTCTTA 3726249 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 ||||||||||||| |||||||| || | || ||| | || || | ||| || || | Sbjct 3732756 TCCATCCATAGAAGTGCATACTGGTGAGCTTGCCATAGTTGGGCTCAGCAATGTGGATGT 3732697 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || ||||||||||| || ||||| | |||||| ||||| | | || | Sbjct 3732696 TCAAAGACTGGCTCTGATCAATGAAAGCACCACGATCAGCAGCCATCTTCAGAACAGTTT 3732637 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||||||||| ||||||| || || | ||| || || Sbjct 3732636 TCTGAGAGATTTCCCATACTGTCTTATAAAGCTGCTTCAGGTCATCGGG 3732588 >seq6919 Length=1122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||||| ||||||||||||| | | | ||| |||||||| Sbjct 624 TTAGAAGTCAGCATCCAAAGTAAAAGAATTCTCTG--TGGGGCTGGACATAACTCCCATC 567 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| || || || || || | || ||| Sbjct 566 CTCTGATACTCGCCCACTCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAGAGAAATATTC 507 Query 18730 TCCATAAAATCAAATGGATTTT 18751 ||||| || ||||||||||||| Sbjct 506 TCCATGAAGTCAAATGGATTTT 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562058666921400