Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq151 86.0 7e-12 seq6919 82.4 9e-11 >seq151 Length=7174217 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 || ||||| || || | ||| || |||||||| | || ||||| | |||| ||| || Sbjct 1182554 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCTCGTTTCTTG 1182495 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| || |||| |||||||| ||||||||||| || ||||| || || ||||| || Sbjct 1182494 AGCCAGAAGATTGACGCAAAAGAACCAGAAAAGAAGATGCCTTCCACAGCGGCAAAGGCC 1182435 Query 37320 AC 37321 || Sbjct 1182434 AC 1182433 >seq6919 Length=1122 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 |||||||||||| | ||||| || || |||| |||| || || || |||||||| |||| Sbjct 579 CATAACTCCCATCCTCTGATACTCGCCCACTC-TCTTCTCAAAGAAGTTTGTCTTCCCTT 521 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | || || ||||| ||||| || ||||||||||| Sbjct 520 CCAGAGAAATATTCTCCATGAAGTCAAATGGATT 487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592263972745400