Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq48 111 2e-19 seq224 95.1 2e-14 >seq48 Length=14429822 Score = 111 bits (122), Expect = 2e-19 Identities = 408/626 (65%), Gaps = 16/626 (3%) Strand=Plus/Plus Query 197127 CTTTCCCACCCCGTTGAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTC 197186 |||||||| || | || | || || |||| || ||||| ||||| | ||| || || Sbjct 4205549 CTTTCCCAAGCCCAGGTAGGCGCCAATTGCCACAAGGTCCAGGGTGTCACCCACACCATC 4205608 Query 197187 CATGTAATCTTTCTTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGC 197246 || ||| || |||||||| ||||||||| | || |||||||| ||||| ||||| || Sbjct 4205609 CAGGTAGTCCTTCTTCAGCTTGAGCCAGTTGTGCGACCTCTTGGCGATCTCATAGGTGGC 4205668 Query 197247 GTTTACGTCCAGGGTCTTGATCATCAATCCCTCGCAATCTTCCTTCACGGCCTTGTTCAT 197306 | || |||| |||||| | ||||| ||||| || || ||||| | || | || Sbjct 4205669 ATCGACATCCAAGGTCTTCACCATCAGCCCCTCACAGGAATCTTTCACCGACTGTTCCAA 4205728 Query 197307 GAAAGTTTGAATGTCTTCCGGTTTGTTAGACATCATATCTCGCGCGAAGATAAATTGTCC 197366 ||| ||| | |||| | || | || ||||||| ||| | || Sbjct 4205729 GAATTCAGCAATCTGCTCCGTGTCCTTGGTGTCCAGGGAAGTGGCGAAGACAAACTCACC 4205788 Query 197367 CTCCACCTCCGTA-AAACAACTCCTC-ATAAGTTCCCTCC-TCTCT-CTGAAGCTCTTGT 197422 ||| ||| || ||| ||||| | || | || | || | | | |||| | Sbjct 4205789 CTCTGTCTC--TACAAAGTTCTCCTGGAGCAGCTGCCGGCGTCGCGACAGGGGCTCACG- 4205845 Query 197423 TGACCTGAGACACTCCGTTCATGTACAACACGTCAAAAGCAAAGACGCACACCTGGACGG 197482 |||| | ||| |||| || | ||| | | ||| || ||| | | |||||||| || Sbjct 4205846 -GACCAGGGACTCTCCATTGAGGTAGATGAGGTCGAAGGCATACAAACACACCTGCACCC 4205904 Query 197483 TTATCTCTTCTTCCTTGACATCTTTACGTTTTCTGGTCGCCAGCTTTTGAAAGGGAAGGA 197542 | ||| | | | || || || | ||| | || | ||| ||| || || ||| Sbjct 4205905 TGATCGCAGCCGTGTCTACCTCCTTCCATTTGCGAGTAGTTAGCACTTGGAATGGTTGGA 4205964 Query 197543 TCTGCTTCTTCTCAACGTCCCAAGCAACTGCCTCAGCGTCCAAGATGAAAGACTTCACTC 197602 |||||||||| || || |||||| || || |||| ||||| ||| || || | ||| Sbjct 4205965 TCTGCTTCTTTTCTGGGTTCCAAGCCACAGCTTCAGTGTCCAGGATAAAGGATGTGACTG 4206024 Query 197603 CCTCG---TTGATCGATTGGGGAAGCCTATTGATTATGTCGGGGTACTTCTCGGTGTTAT 197659 | || ||| ||||||| | | |||| |||||||||||||| ||||||| | Sbjct 4206025 AGGGGAGTTTAATC--TTGGGGATG-CGGCTGATGATGTCGGGGTACTTTCCGGTGTTGT 4206081 Query 197660 TTTCAGAGTTGCGGCTAAAAATTCTAATCTTCCCTCCCTCCATGTA-GTGAATCTGAGCC 197718 ||| || | ||| || | ||| | ||||| ||| | | | || ||||| ||| Sbjct 4206082 CTTCCTGATTCCTGCTGAAGA-TCTTCACCTCCCTGCCTTCTAGAACATGGATCTGTGCC 4206140 Query 197719 CTCTCTCCGTCATACTTGTACTCGCA 197744 |||| || ||||| |||||||| || Sbjct 4206141 CTCTGCCCATCATATTTGTACTCTCA 4206166 >seq224 Length=4060331 Score = 95.1 bits (104), Expect = 2e-14 Identities = 393/608 (65%), Gaps = 24/608 (4%) Strand=Plus/Plus Query 197149 CCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTG 197208 || || ||||| || ||||| ||||| | ||| || |||| ||| || ||||||| ||| Sbjct 1521461 CCAATCACCACAAGGTCCAGGGTGTCACCCACACCATCCAGGTAGTCCTTCTTCACCTTG 1521520 Query 197209 AGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATC 197268 |||||| | || ||||||||||| || ||||| || | || |||| |||||| | | Sbjct 1521521 AGCCAGTTGTGCGACCTCTTGGCAATTTCATAGGTGGCATCGACATCCAAGGTCTTCACC 1521580 Query 197269 ATCAATCCCTCGCAATCTTCCTTCACGGCCTTGTTCATGAAAGTTTGA---ATGTCTTCC 197325 |||| || ||||| || ||||| | || | || ||| || | || | ||| Sbjct 1521581 ATCAGCCCTTCGCAGGAATCTTTCACCGACTGTTCCAAGAA---TTCAGCGATCTGCTCC 1521637 Query 197326 GGTTTGTTAGACATCATATCTCGCGCGAAGATAAATTGTCCCTCCACCTCCGTA-AAACA 197384 | || | || ||||||| ||| | ||||| ||| || ||| Sbjct 1521638 ATGTCCTTGGTGTCCAGGGAGGTGGCGAAGACAAACTCACCCTCTGTCTC--TACAAAGT 1521695 Query 197385 ACT-CCTCATAAGTTCCCTCCTCTC-TC-TG--AAGCTCTTGTTGACCTGAGACACTCCG 197439 || || | || || || | || || ||| || |||| | ||| |||| Sbjct 1521696 TCTCCCGGAGCAG----CTGCTGGCGTCGTGACAAGGGCTCACAGACCAGGGACTCTCCA 1521751 Query 197440 TTCATGTACAACACGTCAAAAGCAAAGACGCACACCTGGACGGTTATCTCTTCTTCCTTG 197499 || | ||| | | ||| || ||| | | |||||||| | ||||| | | | Sbjct 1521752 TTGAGGTAGATGAGGTCGAAGGCATACAAACACACCTGCAACTGGATCTCAGCCGCGTCC 1521811 Query 197500 ACATCTTTACGTTTTCTGGTCGCCAGCTTTTGAAAGGGAAGGATCTGCTTCTTCTCAACG 197559 || || || ||||| | || | | | ||| || || ||||||||||||| || | Sbjct 1521812 ACCTCCTTCCGTTTGCGAGTAGTTACCACTTGGAATGGCTGGATCTGCTTCTTTTCTGGG 1521871 Query 197560 TCCCAAGCAACTGCCTCAGCGTCCAAGATGAAAGACTTCACTCCCTCG---TTGATCGAT 197616 |||||||| || || |||| ||||| ||| || || | ||| | || ||| | Sbjct 1521872 TCCCAAGCCACAGCTTCAGTGTCCAGGATAAAGGATGTGACTGAGGGGAGTTTAATC--T 1521929 Query 197617 TGGGGAAGCCTATTGATTATGTCGGGGTACTTCTCGGTGTTATTTTCAGAGTTGCGGCTA 197676 |||||| | | |||| ||||||||||||| ||||||| | ||| || | ||| Sbjct 1521930 TGGGGATG-CGGCTGATGGTGTCGGGGTACTTTCCGGTGTTGTCTTCCTGATTCCTGCTG 1521988 Query 197677 AAAATTCTAATCTTCCCTCCCTCCATGTAGTGAATCTGAGCCCTCTCTCCGTCATACTTG 197736 || || | | || ||| || || | |||||||| ||||||| || ||||| ||| Sbjct 1521989 AAGATCTTCACCTCCCCGCCTTCTAGAACATGAATCTGTGCCCTCTGCCCATCATATTTG 1522048 Query 197737 TACTCGCA 197744 |||| ||| Sbjct 1522049 TACTTGCA 1522056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676669244178800