Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq73 178 2e-39 seq187 159 6e-34 seq282 125 1e-23 seq288 111 3e-19 seq151 98.7 2e-15 seq156 95.1 2e-14 >seq73 Length=11906491 Score = 178 bits (196), Expect = 2e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || || ||| || ||||| ||||||||| |||||||| || Sbjct 1665374 AGCAGCTGGCAGCCGTTGCTCACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACTTGC 1665433 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | || || |||||| ||||| || |||| ||| ||| |||||| Sbjct 1665434 TCCCGGAGCAGCCCGGCAGTGCTGGACAACCCTGCATTCTCAGCCTTCAGCGTCTTCACC 1665493 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| || ||||| ||| ||||| |||||||| |||| Sbjct 1665494 TTGTCCTCCAGGCGCGCGATGCGCTCTAGTTTCCGCTTCCGGCACTTGGTGGCCGCCAGT 1665553 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | || ||||| |||||||| ||||||| ||| || Sbjct 1665554 CGGTTCCGCAGCCGCTTGCGCTCCACTTTAATGCGCTCCTGGTCTTCCATGTTGATGGGG 1665613 Query 241625 GAC 241627 ||| Sbjct 1665614 GAC 1665616 >seq187 Length=5094135 Score = 159 bits (176), Expect = 6e-34 Identities = 468/712 (66%), Gaps = 22/712 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTT-CT 47897 ||| || || || ||| | ||||||||||||||||||||||| ||||| || || || || Sbjct 4843 CTGATACTCACCAACTATCTTCTCAAAGAAGTTTGTCTTCCCTTCCAAAGAAATATTTCT 4902 Query 47898 CCATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 | |||||| || || || | | | || || | | ||| | |||||||| Sbjct 4903 CTATGAAGTCAAATGGATTTTCCAC-TCGGAAAACCTTGCTGAAGCCTA---GTTCCAGC 4958 Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | | || || || ||| |||| | | | ||| | || |||||| || || Sbjct 4959 ATGAGCCTGTCAGCCACAAACTTGATGCACTGTTTCATCAAATTGGAGTTCATCCCGATA 5018 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 | ||| ||||| ||| ||||| ||||||| ||| || | ||| | ||| Sbjct 5019 GGCTTCACCGGCAAGCCCTCCGTGAGGAACTCCTGCTCAATGCCGATGGCGTTGATGACA 5078 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 |||| | | || | ||| | || |||| |||||||||| | | || ||| Sbjct 5079 ATCTCCCTCACCCTCTGCTCCAACGGCTTGTGCACCAGGTGCTTGA---ACATCAGGCAC 5135 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 | ||||| | ||||||| |||| | ||| ||||| ||||||| ||| ||| ||| Sbjct 5136 ACGAAGTCACAACGCAAGCCCTCGTATCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCA 5195 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| |||| | ||||||||||| || ||| ||||| ||||| ||||| || Sbjct 5196 GGCATGAGGCCCCGTTTCTTGAGCCAGAAGATCAACGCAAAAGAACCAGAAAAGAAAATT 5255 Query 48254 CCCTCCACTGCCGCGAA---CGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| | | || | | ||| | ||||| | | || | ||||| Sbjct 5256 CCTTCCACAGTGACAAAGGCCACCGTGTG---TTCTCCATATGTGGCCTCTTTGTCCCCT 5312 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 |||||| | ||||||||||||||||||||| | || | || ||||| |||| | Sbjct 5313 ATCCAGCGCAACGCCCAGTCTGCCTTCTTCTTCACACAGGCCACGGTCTCAGTGGCATTG 5372 Query 48371 AAGAGCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||||| || | || | || | || || || || | || || ||||| Sbjct 5373 AAGAGAAACT--CCCTTTCTTGGGAATCTCTAATGTAAGTGTCCATAAGGAGTGTGTACA 5430 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 | || || |||| || || || || |||||||| |||||||| || ||| || | Sbjct 5431 TTTCCGAATGCAGGTTTTCCATGGCAATCTGGAAGCCGTAGAAACACCGGGCTTCTGTAA 5490 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATC 48540 || |||||| | |||| ||||| |||||||||| ||||||| ||||| Sbjct 5491 TTTGAACTTCTTGGTTAAATCGCTCCACCAGATTCTCACTGACTATGCCATC 5542 >seq282 Length=2086925 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || || | ||| ||||| || |||||||| |||||||| | | ||||| | ||| Sbjct 1022434 AGCACTTTCTGCTTGAGCTGTGCCACCTGCTCCCGCAGCAGGCTGGCGGTGGACGCCAGC 1022375 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||| ||| ||| || |||||||||| |||| ||||||||| || Sbjct 1022374 TCGGTGTTCTGGCTCTTCAGCGTCTTGACCTTCTCCTCCAAGCGCGAGATGCGTTCAAGC 1022315 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 1022314 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 1022255 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || || ||||| ||||||||||| || || Sbjct 1022254 ATACGCTCCTGCGTGTCCATGTCGATGGGCGA 1022223 >seq288 Length=2168581 Score = 111 bits (122), Expect = 3e-19 Identities = 591/931 (63%), Gaps = 20/931 (2%) Strand=Plus/Plus Query 213482 CAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGAT 213541 |||||| | | |||| ||| ||||| || ||||| | | || || || | || Sbjct 510638 CAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCATTTTTGCTGGTATATTCAACTAT 510697 Query 213542 CTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTT 213601 || |||||||||||||||||| ||| || ||||||||||| ||| ||| || || | Sbjct 510698 TTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGG-TTGCTCTTCCGAT 510756 Query 213602 GGCA-GAATCCTTGTAGAGCATGTA-GGGGGACCCGGTCTCTAGCTGGGACACCAGT-AT 213658 || ||||| |||||||||||||| ||| |||||| |||| ||| ||| |||| || Sbjct 510757 TACAGGAATCTTTGTAGAGCATGTACAGGGTACCCGG-CTCTGTCTGAGAC-TCAGTGAT 510814 Query 213659 CTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA 213718 | ||| || | | || || || || | ||| || | | || || Sbjct 510815 GGTGTACCAAAGCTGCTGAGCTTTTACAACTTTGCGAACATGACCTTGTTT---TTCATA 510871 Query 213719 CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC 213778 ||| || | || | ||||| | ||||| ||| ||||| || ||||| Sbjct 510872 ACTTTCATATAACTTCTCAAATTCCTCTCCCCAAACCTCATCCAGGCCAGGACACTCATT 510931 Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCA-TCTCTGACTCTCTGCATGAACAGGTCCGGGA 213837 ||||||| | ||||||| | | ||||| |||| | |||||| || | | | | Sbjct 510932 TGGACACAGCAAAGACCAGTCCTGATTAGTCTCT-ACTCGTTTCATGAAGAGATTCAGAA 510990 Query 213838 CCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCA 213897 ||| || || ||| || | ||||| | | ||| || ||| | ||| || | Sbjct 510991 TCCAAAGGGCAAAGAAAAGATTCCTGGCACGCTGCTCTTCTTTTCCTGTGTTCTTTTTTA 511050 Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957 ||| ||||| ||||||||||| ||||| ||||||| ||| || ||||| || || | Sbjct 511051 AATCAAGAAACTCAAAGATGTCTAAATGCCAAGGCTCCAGGTAAATAGCAAATGCCCCAG 511110 Query 213958 GCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGG 214014 | | |||| || || || || || | || |||| | | | ||| | | Sbjct 511111 GGCACTTGTTTCCACCTTGATCAACATAACGAGCTGTGTTGTTATACACTCTCAGCATTG 511170 Query 214015 GTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGT 214074 |||| || || || || | || ||||| || ||||| || ||| | |||| | Sbjct 511171 GTACAAGGCCATTAGAATTGCCATTGGTCCCAGCTATGTAGCTGCCAGTAGCCCAAATAC 511230 Query 214075 TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAG 214134 |||| | || || || || || ||| | || || |||| || || || ||| || Sbjct 511231 AACTCACAGTGACACCAATTCCTCCAGCGGATTTAGAAATCAATGCACACTGCTTCAGAG 511290 Query 214135 TCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCT 214194 | || ||||| | ||||||||||| | | |||| | ||| ||||| || || | Sbjct 511291 TGTCATAAATGCCTTCGGTGCTGTCATCTTTCATACTCAGAAGGAAACAGCTTGAAAGTT 511350 Query 214195 GGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAG 214254 | || | | | | || ||||| || | ||| ||||| | | |||| | | Sbjct 511351 GTGGGCAGTTGGTACTAGCATTGAAGAGAGAGGGAGAAGCATGAGTAAACCACTTCTGGG 511410 Query 214255 AGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGC 214314 | || || |||| || || | | | ||||| | ||||| ||| | || Sbjct 511411 AAAGAAGGTTGTATGTTTCAATTGCAGCCTCTATGTCTTCTTTGTGAATCCCCACAGACA 511470 Query 214315 ACCTCATCAGCATGTGCTGGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGAGCAGGT 214371 |||||||| ||| ||||| ||||| | | | ||| || | ||| | || | Sbjct 511471 CCCTCATCAACATATGCTGCGGCCTTTCAGCCACTTTTCCATT---GATCTTCAACAAAT 511527 Query 214372 AGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402 |||| | |||||||||||| || |||||||| Sbjct 511528 AGGACCTCTCCAGAGTCTTAAAGCCAAAGTA 511558 >seq151 Length=7174217 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | ||| ||||| ||||||| ||| ||| |||||||||| || | | ||| Sbjct 1182554 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCTCGTTTCTTG 1182495 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| |||| ||| ||||| ||||| ||||||||||| ||||| || || || || Sbjct 1182494 AGCCAGAAGATTGACGCAAAAGAACCAGAAAAGAAGATGCCTTCCACAGCGGCAAAGGC 1182436 >seq156 Length=6617740 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 241498 CTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGC 241557 ||||||||| ||||||||||| ||||| | ||| || || | | | ||| |||| ||| Sbjct 796875 CTTCACTTTTTCCTCCAGCCGGGCGATCCTTTCGAGCTTCCTCTTCCTGCACTTGGAGGC 796816 Query 241558 TGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTC 241617 || | |||||||| | | ||| | || ||||||||||| |||||| ||||||||| Sbjct 796815 GGCGATGCGGTTCCTCATGCGCTTCCTCTCGGCCTTGATGCGCTCCTGGGACTCCATGTC 796756 Query 241618 GATCGGAGAC 241627 ||| || ||| Sbjct 796755 GATGGGGGAC 796746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931449718918400