Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq187 114 2e-20 seq151 114 2e-20 seq64 84.2 4e-11 >seq187 Length=5094135 Score = 114 bits (126), Expect = 2e-20 Identities = 268/396 (68%), Gaps = 14/396 (4%) Strand=Plus/Minus Query 25621 GATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG--TACGTGG 25678 ||||| ||||| | ||||||||| ||| |||| | | ||||| || ||| | Sbjct 5542 GATGGCATAGTCAGTGAGAATCTGGTGGAGCGATTTAACCAAGAAGTTCAAATTACA--G 5485 Query 25679 AGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATG 25738 | ||| |||||||||||| |||||||| ||||| ||||| |||| || || |||| Sbjct 5484 AAGCCCGGTGTTTCTACGGCTTCCAGATTGCCATGGAAAACCTGCATTCGGAAATGTA-- 5427 Query 25739 CCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTG 25795 || || || ||| || ||||||| ||| | || || || || || || Sbjct 5426 -CACACTCCTTATGGACACTTACATTAGAGATTCCCAAGAAAGGGAGTTTCTCTTCAATG 5368 Query 25796 CCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACA 25855 ||| ||| | | || | | |||| |||||| ||||| || ||||| | Sbjct 5367 CCACTGAGACCGTGGCCTGTGTGAAGAAGAAGGCAGACTGGGCGTTGCGCTGGAT-AGGG 5309 Query 25856 GCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914 | || || | | || | ||| || | ||| ||||||| ||||||| || || || Sbjct 5308 GACAAAGAGGCCACATATGGAGAACACACGGTGGCCTTTGTCACTGTGGAAGGAATTTTC 5249 Query 25915 TTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCT 25973 || ||||| |||||| ||||||||||||||| | | |||| | |||||| || || Sbjct 5248 TTTTCTGGTTCTTTTGCGTTGATCTTCTGGCTCAAGAA-ACGGGGCCTCATGCCTGGCCT 5190 Query 25974 GTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 |||||||||||| ||||| ||||| ||||||| Sbjct 5189 CACCTTTTCCAACGAACTCATTAGCAGATACGAGGG 5154 >seq151 Length=7174217 Score = 114 bits (126), Expect = 2e-20 Identities = 103/127 (81%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| |||||||| |||||||| |||||||| || ||||| |||||| | ||||||| Sbjct 1182431 TGGTGGCCTTTGCCGCTGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCGTCAATCTTCT 1182490 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||||||| | | | |||| |||||| || || |||||||||||| ||||| ||||| Sbjct 1182491 GGCTCAAG-AAACGAGGACTCATGCCTGGCCTCACCTTTTCCAACGAACTCATTAGCAGA 1182549 Query 26002 GACGAGG 26008 ||||||| Sbjct 1182550 GACGAGG 1182556 >seq64 Length=12756018 Score = 84.2 bits (92), Expect = 4e-11 Identities = 180/266 (68%), Gaps = 5/266 (2%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| ||||||||||| ||| || | || |||||| || || ||| ||||| Sbjct 2273161 GACATCTGGAAGATGTACAAGCAGGTGCAGACATCCTTCTGGACGGCAGAGGAGGTTGAT 2273220 Query 25534 CTGGCCAAGGACATGGACGGCTGG--TACGCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 || | ||||| || |||| || |||| | || || ||| | | ||| | Sbjct 2273221 CTATCAAAGGATCTGCCTCACTGGCATAAGCTCAAGCC--GGATGAGAAATACTTTATTT 2273278 Query 25592 AGTACGTGTTGGCAT-TCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 |||| || || | | |||||||| |||||| || || || || || || ||| Sbjct 2273279 CTCACGTCTTAGCCTCTTTTTGCAGCAAATGATGGAATTGTAAATGAAAACTTGGTGGAG 2273338 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | |||| | ||| |||||| | |||||| || |||||||| |||||||| | Sbjct 2273339 CGCTTCAGCCAGGAGGTGCAGGTCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCCTC 2273398 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTA 25736 ||||| ||||| ||||| ||| |||| Sbjct 2273399 ATCGAGAATGTTCACTCAGAGATGTA 2273424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928761958654400