Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq7 114 2e-20 >seq7 Length=34356042 Score = 114 bits (126), Expect = 2e-20 Identities = 187/267 (70%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 153745 CCCGCGTCCCTCAGATGCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAA 153804 || || ||| | ||||| || | | ||| | || ||| | |||||||| || ||||| Sbjct 746294 CCTGCATCCTTAAGATGTTCTCTACAGACTTCCCAGGAAGCCTTAATTGTGACCTGGCAG 746235 Query 153805 AAGAAGAAAGCTGTAGGTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTG 153864 || ||||| | | || | || ||||| ||| ||| || || | ||| || || ||| Sbjct 746234 AAAAAGAAGGTTCTAAGCCCGGAAAACATGATCACCTACAGTGAGAACCATGGGGTTGTG 746175 Query 153865 CTTCAGCCCACATATAAAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGT 153924 |||||||| | ||| | | || | || || || || | || ||| || | || Sbjct 746174 GTTCAGCCCGCCTATGAGAACAGGGTGAACATTACTGAGCTGGGACTTCAGAA-ATCAGC 746116 Query 153925 -ATAACGTTTTGGAATGCAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATAT 153983 || || || ||||||||||||||||| |||||||| ||||| |||||||| || || | Sbjct 746115 CATCACCTTCTGGAATGCAACACTGGAGGATGAAGGATGTTACATGTGTCTCTTCAACAC 746056 Query 153984 GTTCGGTTCTGGTAAGGTATCGGGAAC 154010 || || ||||| ||| | || ||||| Sbjct 746055 CTTTGGCTCTGGGAAGATCTCAGGAAC 746029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649241290627600