Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq95 271 9e-68 seq7 158 1e-33 seq133 118 1e-21 seq26 116 4e-21 seq22 102 9e-17 >seq95 Length=11218802 Score = 271 bits (300), Expect = 9e-68 Identities = 654/985 (66%), Gaps = 11/985 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| ||||||| ||| |||| ||||| | ||| || || ||| || ||||| || Sbjct 6780525 CAGATGCTCGTCCAAACACTGGATAGCGAAGAGGTCCACATCCATGTCAAACTTATTGGC 6780584 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || | ||||| || | || |||||| || ||| || | || || | ||| || Sbjct 6780585 AAAGAAGTGGTGT---TTGCGCAGCATCCAGGTCAAGTCACCAGCTCCAAAAATGCACAC 6780641 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 | || | || || | ||| || ||||| | || || | ||||| ||||| Sbjct 6780642 GCTGCGCACATGGGTACCATCGCAGGGGGGGTAGGGTGCACCCTCATTAACGTCCCCTTC 6780701 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | |||||||||||| ||||||||||| | ||||||||||| || ||| || |||| Sbjct 6780702 GAGGTACTGCCACTTGACAAACCTGGCAACAGCCTGCATGTCAGATAGGTCATACTTGTG 6780761 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| ||| | | ||| || | | || | | ||||| |||||||| |||| || Sbjct 6780762 GCTCAAGGGCAGAGAACCTGGGGCCTCAGGGACCCTCTGTACTGTGGCCCAGAGGTACTC 6780821 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT-GTCCCGCA 160410 ||| |||||||| ||||||| | ||| |||||||||| | ||| | | | || | Sbjct 6780822 GTCTGGGCTGTAGGTGTCCTGTGCCCACTCCATGAACTTTTGGAT-ATCTTCGTTTTCTA 6780880 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | |||| || || ||| | || ||||| || || || || ||||| || ||| Sbjct 6780881 GCACGTAGCCCACATACCCCCTGCTGACCACAAAATAGGCACTCCCTGAGAAAATAGGTG 6780940 Query 160471 T---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCA 160527 | | || || | |||| |||| || |||| | |||| || | | | Sbjct 6780941 TTTTGAGTGGAGACTGCGT---TTTGGGGGTCCCTGTGTCTGTCACCTTCCCATCGATGA 6780997 Query 160528 GCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGAC 160587 | | ||| | |||||||| | || || | |||||| || || ||||||| Sbjct 6780998 CTACATAACGCCTTTTCCACCTTTCTGCTTTATGGGATGGCATCTTCTCTGTTTCTAGAC 6781057 Query 160588 TGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAA 160647 |||| | || || || || |||| | |||| || || ||||| || || | |||| Sbjct 6781058 TGTTTTCTCCCATGAAGGACTTGAGCTTCCTGACCATTTCCAGGTTGGTTTTAATAGGAA 6781117 Query 160648 AGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCC 160707 | || | || || | || |||| ||||||||| || |||| || |||||| Sbjct 6781118 AATCCATCCCACAAAGATTGATCAAGTACTTCCAGCCTGCACTCATTCTGTAGAGGTCCT 6781177 Query 160708 TCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTT 160767 ||||||| || | || |||||||| |||||||| || || || || ||| |||| | | Sbjct 6781178 TCATGCAGTTGAGGTCAGCCTGCACCCGGCTCCATGATGCATAGACCACGCTCTCCAACT 6781237 Query 160768 TACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA 160827 ||||||||||||||| || |||||| || |||| ||| ||| || | ||| Sbjct 6781238 GACTGGCCACAAAGACATTCCTGAAACAGGATGCGATGCCCTTCACTGCGGCTACGAAGG 6781297 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 | || | ||||| |||||| || | |||||| | ||||||||| || ||||||| Sbjct 6781298 AGTCCTCTGACTTTCTGTCCACATGGATGCAATAGAAATTCTGAGGCATATAAATGGCCC 6781357 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || || || ||||| | ||| || || || || ||||| | Sbjct 6781358 TTAGAAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATGGAATATGCAATCGGGA 6781417 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 | | | |||||| ||| |||| | | || || ||| ||||||| ||| | Sbjct 6781418 AGCCTGCCTCCTCTTTACTAAGGGGTTCTACAATATATTTGCGCATCTTGATGAAAGAGG 6781477 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 || |||| ||||||||||| || Sbjct 6781478 GGCAGTCCCTGGTCATGTTGATGTA 6781502 >seq7 Length=34356042 Score = 158 bits (174), Expect = 1e-33 Identities = 227/320 (71%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||||| || || || || ||||||||||| ||| Sbjct 746011 TAGAGGGTAAGGCAGGCTGTTCCTGAGATCTTCCCAGAGCCAAAGGTGTTGAAGAGACAC 746070 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || ||||| ||||||| || | |||||| || || | | ||| || | || Sbjct 746071 ATGTAACATCCTTCATCCTCCAGTGTTGCATTCCAGAAGGTGATGGCTGATTTCTGAAGT 746130 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || |||||||| | | | ||| | || ||||| ||||| || |||||| Sbjct 746131 CCCAGCTCAGTAATGTTCACCCTGTTCTCATAGGCGGGCTGAACCACAACCCCATGGTTC 746190 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 || ||| ||||| |||||| |||||||| |||| | ||||||||||| || || Sbjct 746191 TCACTGTAGGTGATCATGTTTTCCGGGCTTAGAACCTTCTTTTTCTGCCAGGTCACAATT 746250 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | | || | ||||| || |||||||| | || || || ||||||||||| | | Sbjct 746251 AAGGCTTCCTGGGAAGTCTGTAGAGAACATCTTAAGGATGCAGGTGTGTTCAGCAGCTGT 746310 Query 168450 CGCTCATCTTGAGTTACGAC 168469 | ||||| || || || || Sbjct 746311 CTTTCATCCTGGGTCACCAC 746330 >seq133 Length=8262028 Score = 118 bits (130), Expect = 1e-21 Identities = 275/413 (67%), Gaps = 9/413 (2%) Strand=Plus/Plus Query 160625 CTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTT 160684 ||| ||||| || || | ||||| || | || || | || |||| ||||||||| Sbjct 3025945 CTCCAGGTTGGTTTTAATAGGAAAATCCATCCCACAAAGATTGATCAAGTACTTCCAGCC 3026004 Query 160685 CGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGA 160744 || |||| || || ||| ||||||| || | || |||||||| |||||||| || Sbjct 3026005 TGCACTCATTCTGTAGAGATCCTTCATGCAGTTGAGGTCAGCCTGCACCCGGCTCCATGA 3026064 Query 160745 AGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGAT 160804 || || || |||||||| | | ||||||||||||||| || |||||| || ||| Sbjct 3026065 TGCATAGACCACGTTCTCCAACTGACTGGCCACAAAGACATTTCTGAAACAGGATGTGAT 3026124 Query 160805 TCCCACCACCGC---CAGAAAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAA 160859 ||| ||| || | |||| | | ||| || ||| |||||| || | |||| Sbjct 3026125 GCCCTTCACTGCAGTTACAAAGGAGTCCTCTGAT----TTTTTTGTCCACATGGATGCAA 3026180 Query 160860 TACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGA 160919 || | ||||||||| || |||||||| || | ||| || | ||| || | || ||| Sbjct 3026181 TAGAAATTCTGAGGCATATAAATGGCCCTTAGAAGCCTGTCAAGCATTTCAGTTTTGTGA 3026240 Query 160920 TGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTC 160979 || | || || || || || || | || | ||| ||| || | | | || Sbjct 3026241 TGAACTACTATGGAATATGCAGTCAGGAAGCCTATCTTCTCTTTGCTAAAGTGTTCTGTT 3026300 Query 160980 AGGTACTTTCGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | || ||| ||||||| ||| || || || | |||||||||||||| Sbjct 3026301 TTATGTTTGCGCATCTTGATGAAAGAAGTGCAGTCGCTGGTCATGTTGATATA 3026353 >seq26 Length=19343008 Score = 116 bits (128), Expect = 4e-21 Identities = 542/848 (64%), Gaps = 17/848 (2%) Strand=Plus/Plus Query 160120 GGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTA 160179 ||||| |||||| || |||||||||| ||| || | |||| | | ||||| || || Sbjct 16337214 GGTGATGGTTCTGCAGCATCCAGTGCAGGTCCCCCGCCCCGTAAATGCAGATGGCCCGCT 16337273 Query 160180 TGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACT 160239 ||| || || ||| ||| ||| | || || | ||| || || || | | || Sbjct 16337274 GGTGGACCCCAGAGCAGGGCCCGTAAGGGGCCCCCTGGCTCACATCGCCCTCATGCTGCT 16337333 Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299 |||| || || | |||||| || | |||||| ||| ||||||| ||| | ||| Sbjct 16337334 GCCATTTGACCAGCCTGGCGATGGAGACCATGTCTGAGATGTCGTACTTGGGGTGCTGGG 16337393 Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359 | || || || | | || ||||| | ||| ||||| ||||| || || || | Sbjct 16337394 GGGAGGAGCCAGGCATCCAGGAGGCCCGCTGCAAGGTAGCCCAGAGGTGCTCATCAGGAC 16337453 Query 160360 TGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAGAACGTGAG 160419 |||| |||||||| |||||| || | || || | | || || |||||| Sbjct 16337454 TGTAGGTGTCCTTGACCCATTCGATCAGCTGTCGGGATTTGGGGTTATTCAAGACGTGAT 16337513 Query 160420 TAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTAT-A 160478 |||| || || | | || | ||| ||| |||||| ||| || ||| ||| | Sbjct 16337514 GAACGAAGTCTCGAGAAGCCACGATGTAGGCGTTGCCGGTGAACAT-GGTCACATTATTA 16337572 Query 160479 GGCGGCGTGTCTTTGT-CCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCG 160537 || || | | || | |||| ||| | ||| | | ||||||| ||| Sbjct 16337573 GGGGGAGGACCCTTCTTCCTGTT-GGTCATGTACAGCGTGTCCTTCACCACATAGTGG-- 16337629 Query 160538 CTTCTTCCACCTGACCATCTTGTG--CGGTGGC-ATGCGTTCCGTCTCTAGACTGTTGGC 160594 | |||||| | | | |||| | ||| || ||| | ||| | |||||| Sbjct 16337630 -TACTTCCAGCGGGTTTTTTTGTATTCACTGGGTAT---TTCTGACTCCATACTGTTCTT 16337685 Query 160595 ACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGT 160654 |||| | | || || || ||| |||||| || ||||| || |||||||| || Sbjct 16337686 CCCGTTCAACATCTTAAGGGCCTGGACCATCTCTGCATTGGTCTTAAGAGGAAAGTCTGT 16337745 Query 160655 ACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTC-GT-GCAGGTCCCTCATG 160712 ||||| ||| | || |||| |||| || || | || || |||||||| |||| Sbjct 16337746 CCCGCAAGTGTTCAGCAGGTACCTCCAGG--GCACTGGGCTCTGTAGCAGGTCCTCCATG 16337803 Query 160713 CAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTG 160772 || || | || |||||||| | | ||||||||| || || || | || || ||| Sbjct 16337804 CAGTTCAGGTCGGCCTGCACCCTGGACCAGGAAGCATAAACCACCGGAACCAGCTTGCTG 16337863 Query 160773 GCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTA 160832 ||||||||||| || | ||| || || |||| || |||||| ||| | | Sbjct 16337864 GCCACAAAGACATTCTGGAAGCAGGAAGCGATCGCCCTGACCGCCTCTTTGAATGTTTCT 16337923 Query 160833 TCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGC 160892 | ||| ||||||||| | ||| || | ||||| ||| | || | ||| | ||| Sbjct 16337924 GGAGACTTCTCGTCCACGTGGATGCAGTAGACATTCTGGGGCACATACACGGCTCGCAGC 16337983 Query 160893 AACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCG 160952 | || ||| || |||| ||||| | ||| | ||| || ||||| || || || || || Sbjct 16337984 AGCCGCTCAAAGTTCTCGATCTTCTCATGCACCACCATGGAGTAAGCAATAGGGAAGTCC 16338043 Query 160953 GTCTCCTC 160960 |||||| Sbjct 16338044 ACCTCCTC 16338051 >seq22 Length=23942346 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 176235 TATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGA 176294 || ||| |||| |||| || |||| |||||| | ||||| || || | | || |||| Sbjct 1457454 TACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAAAGAATCTGCTGGA 1457513 Query 176295 ATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAAT 176354 || || || ||||| |||| ||||| ||||| | ||| | || || | | || || Sbjct 1457514 ATATAATTCTCATAGTTTTCCCTGGATGGTCCCAGAACAACAGGCACAGATCCAGCCAAG 1457573 Query 176355 AATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAA 176414 || | ||||| |||||||| ||||| || ||||||| ||||||||||||| | | Sbjct 1457574 AAAGCATTGTAGAGCTTTTCTGTTATGTAATCTTTGTGAATCGAGTTTTCAAAAGAGAGA 1457633 Query 176415 TAGAACTTACA 176425 || || ||||| Sbjct 1457634 TAAAATTTACA 1457644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577167719262600