Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01]
7,135 sequences; 2,995,889,303 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq95 271 9e-68
seq7 158 1e-33
seq133 118 1e-21
seq26 116 4e-21
seq22 102 9e-17
>seq95
Length=11218802
Score = 271 bits (300), Expect = 9e-68
Identities = 654/985 (66%), Gaps = 11/985 (1%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| ||||||| ||| |||| ||||| | ||| || || ||| || ||||| ||
Sbjct 6780525 CAGATGCTCGTCCAAACACTGGATAGCGAAGAGGTCCACATCCATGTCAAACTTATTGGC 6780584
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|| | ||||| || | || |||||| || ||| || | || || | ||| ||
Sbjct 6780585 AAAGAAGTGGTGT---TTGCGCAGCATCCAGGTCAAGTCACCAGCTCCAAAAATGCACAC 6780641
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
| || | || || | ||| || ||||| | || || | ||||| |||||
Sbjct 6780642 GCTGCGCACATGGGTACCATCGCAGGGGGGGTAGGGTGCACCCTCATTAACGTCCCCTTC 6780701
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
| |||||||||||| ||||||||||| | ||||||||||| || ||| || ||||
Sbjct 6780702 GAGGTACTGCCACTTGACAAACCTGGCAACAGCCTGCATGTCAGATAGGTCATACTTGTG 6780761
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
||| ||| | | ||| || | | || | | ||||| |||||||| |||| ||
Sbjct 6780762 GCTCAAGGGCAGAGAACCTGGGGCCTCAGGGACCCTCTGTACTGTGGCCCAGAGGTACTC 6780821
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT-GTCCCGCA 160410
||| |||||||| ||||||| | ||| |||||||||| | ||| | | | || |
Sbjct 6780822 GTCTGGGCTGTAGGTGTCCTGTGCCCACTCCATGAACTTTTGGAT-ATCTTCGTTTTCTA 6780880
Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470
| |||| || || ||| | || ||||| || || || || ||||| || |||
Sbjct 6780881 GCACGTAGCCCACATACCCCCTGCTGACCACAAAATAGGCACTCCCTGAGAAAATAGGTG 6780940
Query 160471 T---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCA 160527
| | || || | |||| |||| || |||| | |||| || | | |
Sbjct 6780941 TTTTGAGTGGAGACTGCGT---TTTGGGGGTCCCTGTGTCTGTCACCTTCCCATCGATGA 6780997
Query 160528 GCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGAC 160587
| | ||| | |||||||| | || || | |||||| || || |||||||
Sbjct 6780998 CTACATAACGCCTTTTCCACCTTTCTGCTTTATGGGATGGCATCTTCTCTGTTTCTAGAC 6781057
Query 160588 TGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAA 160647
|||| | || || || || |||| | |||| || || ||||| || || | ||||
Sbjct 6781058 TGTTTTCTCCCATGAAGGACTTGAGCTTCCTGACCATTTCCAGGTTGGTTTTAATAGGAA 6781117
Query 160648 AGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCC 160707
| || | || || | || |||| ||||||||| || |||| || ||||||
Sbjct 6781118 AATCCATCCCACAAAGATTGATCAAGTACTTCCAGCCTGCACTCATTCTGTAGAGGTCCT 6781177
Query 160708 TCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTT 160767
||||||| || | || |||||||| |||||||| || || || || ||| |||| | |
Sbjct 6781178 TCATGCAGTTGAGGTCAGCCTGCACCCGGCTCCATGATGCATAGACCACGCTCTCCAACT 6781237
Query 160768 TACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA 160827
||||||||||||||| || |||||| || |||| ||| ||| || | |||
Sbjct 6781238 GACTGGCCACAAAGACATTCCTGAAACAGGATGCGATGCCCTTCACTGCGGCTACGAAGG 6781297
Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887
| || | ||||| |||||| || | |||||| | ||||||||| || |||||||
Sbjct 6781298 AGTCCTCTGACTTTCTGTCCACATGGATGCAATAGAAATTCTGAGGCATATAAATGGCCC 6781357
Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947
| || | ||| || | ||| || || || ||||| | ||| || || || || ||||| |
Sbjct 6781358 TTAGAAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATGGAATATGCAATCGGGA 6781417
Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007
| | | |||||| ||| |||| | | || || ||| ||||||| ||| |
Sbjct 6781418 AGCCTGCCTCCTCTTTACTAAGGGGTTCTACAATATATTTGCGCATCTTGATGAAAGAGG 6781477
Query 161008 CACAATCCCGCGTCATGTTGATATA 161032
|| |||| ||||||||||| ||
Sbjct 6781478 GGCAGTCCCTGGTCATGTTGATGTA 6781502
>seq7
Length=34356042
Score = 158 bits (174), Expect = 1e-33
Identities = 227/320 (71%), Gaps = 0/320 (0%)
Strand=Plus/Plus
Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209
|| || || | ||| | | |||| || ||||| || || || || ||||||||||| |||
Sbjct 746011 TAGAGGGTAAGGCAGGCTGTTCCTGAGATCTTCCCAGAGCCAAAGGTGTTGAAGAGACAC 746070
Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269
||| | || ||||| ||||||| || | |||||| || || | | ||| || | ||
Sbjct 746071 ATGTAACATCCTTCATCCTCCAGTGTTGCATTCCAGAAGGTGATGGCTGATTTCTGAAGT 746130
Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329
|||| || || |||||||| | | | ||| | || ||||| ||||| || ||||||
Sbjct 746131 CCCAGCTCAGTAATGTTCACCCTGTTCTCATAGGCGGGCTGAACCACAACCCCATGGTTC 746190
Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389
|| ||| ||||| |||||| |||||||| |||| | ||||||||||| || ||
Sbjct 746191 TCACTGTAGGTGATCATGTTTTCCGGGCTTAGAACCTTCTTTTTCTGCCAGGTCACAATT 746250
Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449
| | || | ||||| || |||||||| | || || || ||||||||||| | |
Sbjct 746251 AAGGCTTCCTGGGAAGTCTGTAGAGAACATCTTAAGGATGCAGGTGTGTTCAGCAGCTGT 746310
Query 168450 CGCTCATCTTGAGTTACGAC 168469
| ||||| || || || ||
Sbjct 746311 CTTTCATCCTGGGTCACCAC 746330
>seq133
Length=8262028
Score = 118 bits (130), Expect = 1e-21
Identities = 275/413 (67%), Gaps = 9/413 (2%)
Strand=Plus/Plus
Query 160625 CTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTT 160684
||| ||||| || || | ||||| || | || || | || |||| |||||||||
Sbjct 3025945 CTCCAGGTTGGTTTTAATAGGAAAATCCATCCCACAAAGATTGATCAAGTACTTCCAGCC 3026004
Query 160685 CGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGA 160744
|| |||| || || ||| ||||||| || | || |||||||| |||||||| ||
Sbjct 3026005 TGCACTCATTCTGTAGAGATCCTTCATGCAGTTGAGGTCAGCCTGCACCCGGCTCCATGA 3026064
Query 160745 AGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGAT 160804
|| || || |||||||| | | ||||||||||||||| || |||||| || |||
Sbjct 3026065 TGCATAGACCACGTTCTCCAACTGACTGGCCACAAAGACATTTCTGAAACAGGATGTGAT 3026124
Query 160805 TCCCACCACCGC---CAGAAAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAA 160859
||| ||| || | |||| | | ||| || ||| |||||| || | ||||
Sbjct 3026125 GCCCTTCACTGCAGTTACAAAGGAGTCCTCTGAT----TTTTTTGTCCACATGGATGCAA 3026180
Query 160860 TACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGA 160919
|| | ||||||||| || |||||||| || | ||| || | ||| || | || |||
Sbjct 3026181 TAGAAATTCTGAGGCATATAAATGGCCCTTAGAAGCCTGTCAAGCATTTCAGTTTTGTGA 3026240
Query 160920 TGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTC 160979
|| | || || || || || || | || | ||| ||| || | | | ||
Sbjct 3026241 TGAACTACTATGGAATATGCAGTCAGGAAGCCTATCTTCTCTTTGCTAAAGTGTTCTGTT 3026300
Query 160980 AGGTACTTTCGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032
| || ||| ||||||| ||| || || || | ||||||||||||||
Sbjct 3026301 TTATGTTTGCGCATCTTGATGAAAGAAGTGCAGTCGCTGGTCATGTTGATATA 3026353
>seq26
Length=19343008
Score = 116 bits (128), Expect = 4e-21
Identities = 542/848 (64%), Gaps = 17/848 (2%)
Strand=Plus/Plus
Query 160120 GGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTA 160179
||||| |||||| || |||||||||| ||| || | |||| | | ||||| || ||
Sbjct 16337214 GGTGATGGTTCTGCAGCATCCAGTGCAGGTCCCCCGCCCCGTAAATGCAGATGGCCCGCT 16337273
Query 160180 TGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACT 160239
||| || || ||| ||| ||| | || || | ||| || || || | | ||
Sbjct 16337274 GGTGGACCCCAGAGCAGGGCCCGTAAGGGGCCCCCTGGCTCACATCGCCCTCATGCTGCT 16337333
Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299
|||| || || | |||||| || | |||||| ||| ||||||| ||| | |||
Sbjct 16337334 GCCATTTGACCAGCCTGGCGATGGAGACCATGTCTGAGATGTCGTACTTGGGGTGCTGGG 16337393
Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359
| || || || | | || ||||| | ||| ||||| ||||| || || || |
Sbjct 16337394 GGGAGGAGCCAGGCATCCAGGAGGCCCGCTGCAAGGTAGCCCAGAGGTGCTCATCAGGAC 16337453
Query 160360 TGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAGAACGTGAG 160419
|||| |||||||| |||||| || | || || | | || || ||||||
Sbjct 16337454 TGTAGGTGTCCTTGACCCATTCGATCAGCTGTCGGGATTTGGGGTTATTCAAGACGTGAT 16337513
Query 160420 TAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTAT-A 160478
|||| || || | | || | ||| ||| |||||| ||| || ||| ||| |
Sbjct 16337514 GAACGAAGTCTCGAGAAGCCACGATGTAGGCGTTGCCGGTGAACAT-GGTCACATTATTA 16337572
Query 160479 GGCGGCGTGTCTTTGT-CCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCG 160537
|| || | | || | |||| ||| | ||| | | ||||||| |||
Sbjct 16337573 GGGGGAGGACCCTTCTTCCTGTT-GGTCATGTACAGCGTGTCCTTCACCACATAGTGG-- 16337629
Query 160538 CTTCTTCCACCTGACCATCTTGTG--CGGTGGC-ATGCGTTCCGTCTCTAGACTGTTGGC 160594
| |||||| | | | |||| | ||| || ||| | ||| | ||||||
Sbjct 16337630 -TACTTCCAGCGGGTTTTTTTGTATTCACTGGGTAT---TTCTGACTCCATACTGTTCTT 16337685
Query 160595 ACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGT 160654
|||| | | || || || ||| |||||| || ||||| || |||||||| ||
Sbjct 16337686 CCCGTTCAACATCTTAAGGGCCTGGACCATCTCTGCATTGGTCTTAAGAGGAAAGTCTGT 16337745
Query 160655 ACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTC-GT-GCAGGTCCCTCATG 160712
||||| ||| | || |||| |||| || || | || || |||||||| ||||
Sbjct 16337746 CCCGCAAGTGTTCAGCAGGTACCTCCAGG--GCACTGGGCTCTGTAGCAGGTCCTCCATG 16337803
Query 160713 CAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTG 160772
|| || | || |||||||| | | ||||||||| || || || | || || |||
Sbjct 16337804 CAGTTCAGGTCGGCCTGCACCCTGGACCAGGAAGCATAAACCACCGGAACCAGCTTGCTG 16337863
Query 160773 GCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTA 160832
||||||||||| || | ||| || || |||| || |||||| ||| | |
Sbjct 16337864 GCCACAAAGACATTCTGGAAGCAGGAAGCGATCGCCCTGACCGCCTCTTTGAATGTTTCT 16337923
Query 160833 TCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGC 160892
| ||| ||||||||| | ||| || | ||||| ||| | || | ||| | |||
Sbjct 16337924 GGAGACTTCTCGTCCACGTGGATGCAGTAGACATTCTGGGGCACATACACGGCTCGCAGC 16337983
Query 160893 AACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCG 160952
| || ||| || |||| ||||| | ||| | ||| || ||||| || || || || ||
Sbjct 16337984 AGCCGCTCAAAGTTCTCGATCTTCTCATGCACCACCATGGAGTAAGCAATAGGGAAGTCC 16338043
Query 160953 GTCTCCTC 160960
||||||
Sbjct 16338044 ACCTCCTC 16338051
>seq22
Length=23942346
Score = 102 bits (112), Expect = 9e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 176235 TATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGA 176294
|| ||| |||| |||| || |||| |||||| | ||||| || || | | || ||||
Sbjct 1457454 TACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAAAGAATCTGCTGGA 1457513
Query 176295 ATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAAT 176354
|| || || ||||| |||| ||||| ||||| | ||| | || || | | || ||
Sbjct 1457514 ATATAATTCTCATAGTTTTCCCTGGATGGTCCCAGAACAACAGGCACAGATCCAGCCAAG 1457573
Query 176355 AATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAA 176414
|| | ||||| |||||||| ||||| || ||||||| ||||||||||||| | |
Sbjct 1457574 AAAGCATTGTAGAGCTTTTCTGTTATGTAATCTTTGTGAATCGAGTTTTCAAAAGAGAGA 1457633
Query 176415 TAGAACTTACA 176425
|| || |||||
Sbjct 1457634 TAAAATTTACA 1457644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577167719262600
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