Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq23 96.9 5e-15 >seq23 Length=20549582 Score = 96.9 bits (106), Expect = 5e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 48074 CACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCT 48133 ||||||| || || | |||||||||||| |||||||| |||| || | |||||||||| Sbjct 17241084 CACCATATGGTGACCTTGGATAGAAAGGAGTGGTCTCCTTCTGGGGTATTTCTTGCACCT 17241025 Query 48134 TACCATAAAGTTCACTGGTGGATGCTTGATAGA 48166 | |||||||||||||| ||||| || || |||| Sbjct 17241024 TCCCATAAAGTTCACTCGTGGAGGCCTGGTAGA 17240992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665435046218200