Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq84 91.5 2e-13 seq206 82.4 9e-11 seq146 82.4 9e-11 >seq84 Length=11882382 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || ||||| ||||| || ||| | ||| | || | || ||||| || ||||| || Sbjct 856472 GGAGCCAAAATCCCAAAGGGAGCCATGCTCACTTGTCACCCTGGTACCGGCAAGACGCTT 856413 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAA 175394 |||||| ||||||| || || || | | || || ||||| | ||| | | | | Sbjct 856412 CTCGCCAGAGCCATGGCTGGGGAGGCCAGCGTGCCCTTCATTACCGTGAACGGGT-CGGA 856354 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAA-AAGGGTTCGCGATCTCTTTGAAATCG 175453 || | |||| |||||||||||| || |||| |||||| || || |||| ||| | Sbjct 856353 GTTCCTAGAGAGGTTTGTTGGTGTTGG-GCCAGCAAGGGTACGTGACACGTTTGTAATGG 856295 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 || | ||||| ||| ||||| | |||||||||||||||||||| Sbjct 856294 CCAGGAAAAATGCACCTTGTATCTTATTCATTGATGAGATTGATGC 856249 >seq206 Length=4534510 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/167 (71%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| |||| || || |||| ||||| |||||| || ||| |||| |||||| Sbjct 2976302 TCTCAGAC--AGACGGGTACCCCATTCATGCTCTACAAGCATTCTTATAACTGGAAGAGC 2976245 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| ||||| ||||||||||||| || || || ||| ||||| |||| || Sbjct 2976244 AACCAGAAGAACCTGGGAACAATCAAATGCAGCAACCTGCACACAGAAATGGTAGAATAG 2976185 Query 76016 ACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCT 76062 || || |||||| || ||||| | ||||| || | ||||| Sbjct 2976184 ACCAGCAAAGATGAGGTTGCAGTTTGTATCTTGGCTTCCCTGGCCCT 2976138 >seq146 Length=7541600 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| ||||| || || || || ||||| ||||| ||| | ||||| |||||| Sbjct 3716226 TCTCAGACCGAGACAGGTACCCCGTACATGCTCTACAAAGATTCCTGTAATCGGAAGAGC 3716285 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| ||||||||||||| || || || ||||| ||||| |||| || Sbjct 3716286 AACCAGCAGAACCTGGGAACAATCAAATGCAGCAACCTGTGCACAGAAATAGTAGAATAT 3716345 Query 76016 ACAGATAAGGATGAG 76030 || || |||||| Sbjct 3716346 ACCAGCAAAGATGAG 3716360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596516393448800