Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq203 95.1 2e-14 seq164 95.1 2e-14 seq70 95.1 2e-14 seq21 93.3 8e-14 seq84 89.7 9e-13 seq10 89.7 9e-13 seq79 86.0 1e-11 seq146 84.2 4e-11 >seq203 Length=4329578 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || || || || || || | ||| || Sbjct 2169445 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTACGTCCATCTTCC 2169386 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| || | || || ||||||||||| |||||||| ||||| || Sbjct 2169385 AGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 2169326 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || | ||||| || || || || || || Sbjct 2169325 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTC 2169266 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || ||||| || Sbjct 2169265 CCCGTAAGGGTTTTCACGAAAATCTGCATCTT 2169234 >seq164 Length=5921534 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || || || || || || | ||| || Sbjct 5181233 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTACGTCCATCTTCC 5181174 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| || | || || ||||||||||| |||||||| ||||| || Sbjct 5181173 AGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 5181114 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || | ||||| || || || || || || Sbjct 5181113 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTC 5181054 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || ||||| || Sbjct 5181053 CCAGTAAGGGTTTTCACGAAAATCTGCATCTT 5181022 >seq70 Length=12294693 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || || || | || || | ||| || Sbjct 8652717 ACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGGCAAGGTCCGTCCATCTTCC 8652776 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | || || ||||||||||| ||||||| ||||| || Sbjct 8652777 AGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTTCTTATCCTGG 8652836 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || | | |||||| || || || || || || Sbjct 8652837 ATCTTGGCCTTTACATTTTCTATAGTGTCCCAGGGCTCAACCTCGAGCGTGATGGTCTTT 8652896 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || ||||| || || || ||||| || Sbjct 8652897 CCTGTGAGGGTTTTCACGAAAATCTGCATCTT 8652928 >seq21 Length=22121357 Score = 93.3 bits (102), Expect = 8e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 193156 GATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATT 193215 |||| | |||| ||| || ||| || || || || || || | ||| || | || Sbjct 9496169 GATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTACGTCCATCTTCCAGTT 9496110 Query 193216 GTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTT 193275 | || || ||||| || | || || ||||||||||| |||||||| ||||| || || | Sbjct 9496109 GCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCT 9496050 Query 193276 TGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTG 193335 ||| |||| |||| ||||| || || | |||||| || || | || || || || | Sbjct 9496049 TGGCCTTTACATTTTCTATAGTGTCCGAGGGCTCAACCTCAAGCATGATGGTCTTCCCCG 9495990 Query 193336 TTAGCGTTTTTACAAATATTTGCATTTTATT 193366 | | ||||| || || || ||||| || || Sbjct 9495989 TAAAGGTTTTCACGAAAATCTGCATCTTGTT 9495959 >seq84 Length=11882382 Score = 89.7 bits (98), Expect = 9e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| |||| || || |||| |||| || | |||||| || || ||||| || Sbjct 2977025 CCACCCCTCAGACGGAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 2976966 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | ||| || | || || || || || || | ||||| || |||||||| Sbjct 2976965 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 2976906 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||||||||| || || |||| || | |||| ||| ||||| || ||| ||| Sbjct 2976905 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTAGGCTCCACT 2976846 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || || || ||||| Sbjct 2976845 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2976799 >seq10 Length=29551940 Score = 89.7 bits (98), Expect = 9e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || |||| || | || || ||||||||||| |||||||| || Sbjct 27752503 ATCTTCCAGTTGCTTACCAGCAAGGATCAGCCTGTGCTGATCAGGAGGAATTCCTTCCTT 27752562 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || ||| || |||| |||| |||| | ||| || | | |||||||| || | || Sbjct 27752563 ATTTTGGATCTTGGCCTTTACATTTTCTACAGTGTCCAAGGGTTCAACTTCAAGCATGAT 27752622 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| || ||||| ||||| || ||||| || Sbjct 27752623 GGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCATCTT 27752661 >seq79 Length=11620627 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || || || || || || | ||| || Sbjct 6673229 ACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTACGTCCATCTTCC 6673288 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 ||| || || || | || | || || ||||||||||| |||||||| ||||| || Sbjct 6673289 CGTTGCTTACCACCACAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 6673348 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || | || ||| || || || || || || Sbjct 6673349 ATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGCTGAACCTCCAGTGTGATGGTCTTC 6673408 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| ||||| || | ||| || Sbjct 6673409 CCCGTAAGGGTTTTCACAAAAATCTCCATCTT 6673440 >seq146 Length=7541600 Score = 84.2 bits (92), Expect = 4e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| || | || || ||||||||||| |||||||| || Sbjct 3493569 ATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTT 3493510 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| ||||| || || | ||| | || || || || Sbjct 3493509 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCACCCTCGAGTGTGAT 3493450 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || | || ||||| || || || ||||| || Sbjct 3493449 GGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATCTT 3493411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899574162073200