Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq164 89.7 8e-13 seq203 84.2 3e-11 seq151 84.2 3e-11 >seq164 Length=5921534 Score = 89.7 bits (98), Expect = 8e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | ||||| | ||||| || || || || | || || ||| Sbjct 5181022 AAGATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACGCTCGAGGTTGAACCC 5181081 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| ||| || || || || || ||||| ||||| || ||||| || Sbjct 5181082 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 5181141 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||||| |||| | ||| ||||||||||| |||||| | || || || ||||| Sbjct 5181142 CAGCAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGTACCTTGTCTGATTAC 5181201 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || ||| ||| | || |||||| | ||||| ||| | | || |||| Sbjct 5181202 AACAT-TCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTCCGTGGTGGTG 5181253 >seq203 Length=4329578 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | ||||| | || || || || || || | || || ||| Sbjct 2169234 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCC 2169293 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| ||| || || || || || ||||| ||||| || ||||| || Sbjct 2169294 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2169353 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||||| |||| | ||| ||||||||||| |||||| | || || || ||||| Sbjct 2169354 CAGCAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGTACCTTGTCTGATTAC 2169413 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || ||| ||| | || |||||| | ||||| ||| | | || |||| Sbjct 2169414 AACAT-TCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTCCGTGGTGGTG 2169465 >seq151 Length=7174217 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 |||||||||||||||| || |||||||| || | || | |||||||| ||||||||| Sbjct 1180962 TTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGCAGACTGTACATTTCCGAATGTATGT 1180903 Query 18471 TTTCCATAGCTATCTGAAA 18489 |||||||||| ||||| || Sbjct 1180902 TTTCCATAGCAATCTGGAA 1180884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731806726166000