Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq20 87.8 1e-12 seq76 86.0 5e-12 seq25 86.0 5e-12 seq70 84.2 2e-11 seq10 84.2 2e-11 >seq20 Length=23447253 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 107542 ATAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCG 107601 |||| |||| ||||||||||| ||||| || || | || ||||| ||||| ||| | | Sbjct 21063848 ATAACAGGTC-AAAATGCAAATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGG 21063790 Query 107602 AAACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCG 107661 || |||| | | || || | | | || || ||||| |||||||||||| Sbjct 21063789 AAGTGGAGCCCAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCA 21063730 Query 107662 TGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAA 107721 | || || |||||||| || || | || || || |||||||| || | | || Sbjct 21063729 TCCCTCCTGACCAGCAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTC 21063670 Query 107722 TGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 | | ||||||||||| ||||| ||||| || ||||| |||| Sbjct 21063669 TTTCTGACTACAACATCCAAAAAGAGTCCACTCTGCACTTGGT 21063627 >seq76 Length=11650222 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || || || || | || ||||| ||||| ||| |||| |||| | Sbjct 5166476 AAAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCC 5166535 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| || | | | || || ||||| || || |||||| | ||| || Sbjct 5166536 AGCGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCTGAC 5166595 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | ||| || || |||||||| || | || || | |||||| Sbjct 5166596 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTAC 5166655 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||| || ||||| ||||| | | ||||||| || Sbjct 5166656 AACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTCCGCCTGCGAGGTGG 5166705 >seq25 Length=20573850 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 107548 GGTTT-AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACG 107606 ||||| |||||||| || ||||| || || | || ||||| ||||| ||| | || | Sbjct 10707497 GGTTTGAAAATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTG 10707438 Query 107607 GAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCC 107666 ||| | |||| || | | | || || ||||| || || |||||| | ||| Sbjct 10707437 GAGCCCAGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCC 10707378 Query 107667 GTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCG 107726 || |||||||| || || | ||| || || |||||||| || | || || | Sbjct 10707377 CCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCT 10707318 Query 107727 GACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||||| || |||||||| || ||||| ||||| Sbjct 10707317 GACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 10707279 >seq70 Length=12294693 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| || ||||| | ||||| || ||||| || |||| ||| | Sbjct 8652928 AAGATGCAGATTTTCGTGAAAACCCTCACAGGAAAGACCATCACGCTCGAGGTTGAGCCC 8652869 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | || ||| | | | ||||| ||||| ||||| |||| | || ||| Sbjct 8652868 TGGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGAAAGGAATTCCTCCTGAT 8652809 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| || || || | ||| ||||| || ||||| || | || || | || ||| Sbjct 8652808 CAGCAAAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGGACCTTGCCTGATTAC 8652749 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792 |||||||||||||||||||| | || | ||||||||| | || || || ||| ||| Sbjct 8652748 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGCGGTGGTGCTAAGAAA 8652689 Query 107793 A 107793 | Sbjct 8652688 A 8652688 >seq10 Length=29551940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 107542 ATAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCG 107601 |||| |||| ||||||||||| || || || || | || ||||| ||||| ||| | | Sbjct 4925621 ATAACAGGTC-AAAATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGG 4925679 Query 107602 AAACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCG 107661 || |||| | | || || | | | || || ||||| |||||||||||| Sbjct 4925680 AAGTGGAGCCCAGTGACACCATTGAGAACGTGAAGACCAAGATCCAGGATAAAGAAGGCC 4925739 Query 107662 TGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAA 107721 | || || |||||||| || || | || || || |||||||| |||| | || Sbjct 4925740 TCCCTCCTGACCAGCAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGACGGCCGTACTC 4925799 Query 107722 TGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 | | ||||||||||| || || ||||| || ||||| |||| Sbjct 4925800 TTTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACTTGGT 4925842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398842114546015