Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq151 104 2e-17 >seq151 Length=7174217 Score = 104 bits (114), Expect = 2e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 |||||||| |||||||||| |||||||| |||| | ||||| |||| || | ||| Sbjct 1313033 TCTAGCATCTGGGGGCCTACGTGCGATGGTCTAGACCGAATTGTGGAGCGCTGCAACCTG 1312974 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 |||||||| || ||||||||||| | | ||||| |||||||| || |||| | ||| | Sbjct 1312973 CCAGAGCTGCACATGGGCGACTGGATGCTCTTTGAGAACATGGGTGCCTACACCGTGG-C 1312915 Query 21242 AGC-TCTTCAACCTTTAACGGCTTCC 21266 || | || ||||| || ||||||| Sbjct 1312914 TGCAGCCTCCACCTTCAATGGCTTCC 1312889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463504257526800