Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq95 196 6e-45 seq7 170 2e-37 seq133 104 3e-17 seq26 93.3 5e-14 >seq95 Length=11218802 Score = 196 bits (216), Expect = 6e-45 Identities = 607/932 (65%), Gaps = 17/932 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||| | ||||| | |||| |||||| | |||||||| ||||| | ||| ||| Sbjct 6780509 CCAGAGCTTTATGCCTCAGATGCTCGTCCAAACACTGGATAGCGAAGAGGTCCACATCCA 6780568 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || || | ||| || || || ||||| | | || || | Sbjct 6780569 TGTCAAACTTATTGGCAAAGAAGTGGTGT---TTGCGCAGCATCCAGGTCAAGTCACCAG 6780625 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || | ||||||| ||||| || || ||| || || || | || || | Sbjct 6780626 CTCCAAAAATGCACACGCTGCGCACATGGGTACCATCGCAGGGGGGGTAGGGTGCACCCT 6780685 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || ||||| ||| ||| |||||||| || ||||| | | |||||||||||| | Sbjct 6780686 CATTAACGTCCCCTTCGAGGTACTGCCACTTGACAAACCTGGCAACAGCCTGCATGTCAG 6780745 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||| ||||||| | |||| | || || | | || | ||||||| | Sbjct 6780746 ATAGGTCATACTTGTGGCTCAAGGGCAGAGAACCTGGGGCCTCAGGGACCCTCTGTACTG 6780805 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| |||| |||||||| || || || |||| | |||||||||||||| || Sbjct 6780806 TGGCCCAGAGGTACTCGTCTGGGCTGTAGGTGTCCTGTGCCCACTCCATGAACTTTTGGA 6780865 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 || | | ||| | ||| || || |||| | || | ||| || || || | Sbjct 6780866 TATCTTCGTTTTCTAGCACGTAGCCCACATACCCCCTGCTGACCACAAAATAGGCACTCC 6780925 Query 162479 C--AGAAAACACGGGTAT-GCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGT-TGACT 162534 | |||||| | | || | | || |||| || |||| || |||| || | Sbjct 6780926 CTGAGAAAATAGGTGTTTTGAGT---GGAGACTGCGTTTTGGGGGTCCCTGTGTCTGTC- 6780981 Query 162535 ACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 ||| | || || | ||| || | | | | ||||||| | ||| || | | Sbjct 6780982 ACCTTCCCATCGATGACTACATAACGCCTTTTCCACCTTTCTGCTTTATGGGATGGCATC 6781041 Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 | || || ||||||||||| ||| |||| ||| |||| | ||||| || || Sbjct 6781042 TTCTCTGTTTCTAGACTGTTTTCTCCCATGAAGGACTTGAGCTTCCTGACCATTTCCAGG 6781101 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| ||||| || | || || ||||| || | || ||||| | || Sbjct 6781102 TTGGTTTTAATAGGAAAATCCATCCCACAAAGATTGATCAAGTACTTCCAGCCTGCACTC 6781161 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | || ||| || |||| | ||||| || || ||||| || || ||||| || || || Sbjct 6781162 ATTCTGTAGAGGTCCTTCATGCAGTTGAGGTCAGCCTGCACCCGGCTCCATGATGCATAG 6781221 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || |||||||||||| | |||| ||||||||||| |||||| || | || ||| || Sbjct 6781222 ACCACGCTCTCCAACTGACTGGCCACAAAGACATTCCTGAAACAGGATGCGATGCCCTTC 6781281 Query 162835 ACGGCCAGTGAGAACATCGGGTCCGCT---TTCCTATCTACGTGTACGCAGTATAGATTC 162891 || || | ||| | |||| || || || || || || | ||| || | |||| Sbjct 6781282 ACTGCGGCTACGAA---GGAGTCCTCTGACTTTCTGTCCACATGGATGCAATAGAAATTC 6781338 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| || |||||||| || | || || | ||| || || || || || ||||| Sbjct 6781339 TGAGGCATATAAATGGCCCTTAGAAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACT 6781398 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| || || ||||| | |||||||| Sbjct 6781399 ATGGAATATGCAATCGGGAAGCCTGCCTCCTC 6781430 >seq7 Length=34356042 Score = 170 bits (188), Expect = 2e-37 Identities = 233/323 (72%), Gaps = 2/323 (1%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || || || || ||||| || || || | || Sbjct 746009 CATAGAGGGTAAGGCAGGCTGTTCCTGAGATCTTCCCAGAGCCAAAGGTGTTGAAGAGAC 746068 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| || | ||||| || || | | || ||||||| Sbjct 746069 ACATGTAACATCCTTCATCCTCCAGTGTTGCATTCCAGAAGGTGATGGCTGA-TTTCTGA 746127 Query 171891 -GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGA 171949 |||| || | ||||||||||||| || || || | ||||| || ||||| || || Sbjct 746128 AGTCCCAGCTCAGTAATGTTCACCCTGTTCTCATAGGCGGGCTGAACCACAACCCCATGG 746187 Query 171950 TTCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACT 172009 ||||| ||| | ||| ||||||||| ||||| | |||| | |||||||| || || Sbjct 746188 TTCTCACTGTAGGTGATCATGTTTTCCGGGCTTAGAACCTTCTTTTTCTGCCAGGTCACA 746247 Query 172010 ATTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAAT 172069 ||||| |||| | | || || ||||| |||||||| || ||||||||||||| | Sbjct 746248 ATTAAGGCTTCCTGGGAAGTCTGTAGAGAACATCTTAAGGATGCAGGTGTGTTCAGCAGC 746307 Query 172070 TCCCTTTCGTCTTGCGTTACCAC 172092 | ||||| || || || ||||| Sbjct 746308 TGTCTTTCATCCTGGGTCACCAC 746330 Score = 149 bits (164), Expect = 7e-31 Identities = 173/233 (74%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 171518 TCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTT 171577 || || |||| ||||||||| | ||| | ||| |||||||||| | || || || || Sbjct 743641 TCAGTCACAGCCCCCAAGTGCAGGACCTGGCAAATCACCTCCT---TCCCAACCTGGCTC 743697 Query 171578 TTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACG 171637 || | |||||| || | || |||||||| |||||||| || || ||| |||| | ||| Sbjct 743698 TTGGCATCTTTGACCCGGAGGATGCTAGTGACAGATGTGGTTCCATTAGGATGCAAAACA 743757 Query 171638 GTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGT 171697 | | ||||||||| || | || || || || || ||||| | | ||||| ||||| Sbjct 743758 CTCTCAGTACTATTCTCAAGCCCTGACCCAGCGACCTTCCAGGAGACCACAGGGGCTGGG 743817 Query 171698 CTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCATAGTG 171750 | ||||| ||||||||||| ||||||| | |||||| ||||| || ||||| Sbjct 743818 CGGGCAGTGGCAGAGCAAGTAATGTTTAGTTGATCTTCAAAGAAATCGTAGTG 743870 >seq133 Length=8262028 Score = 104 bits (114), Expect = 3e-17 Identities = 216/319 (68%), Gaps = 7/319 (2%) Strand=Plus/Plus Query 162648 CTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTT 162707 ||| || ||||| |||| ||||| || | || || ||||| || | || ||||| Sbjct 3025945 CTCCAGGTTGGTTTTAATAGGAAAATCCATCCCACAAAGATTGATCAAGTACTTCCAGCC 3026004 Query 162708 AACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGA 162767 | || | || ||| ||||||| | ||||| || || ||||| || || ||||| || Sbjct 3026005 TGCACTCATTCTGTAGAGATCCTTCATGCAGTTGAGGTCAGCCTGCACCCGGCTCCATGA 3026064 Query 162768 CGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTAT 162827 || || || ||| |||||||| | |||| ||||||||||| |||||| || || Sbjct 3026065 TGCATAGACCACGTTCTCCAACTGACTGGCCACAAAGACATTTCTGAAACAGGATGTGAT 3026124 Query 162828 CCCCATCACGGCCAGTGAGAACATCGGGTCCGC----TTTCCTATCTACGTGTACGCAGT 162883 ||| |||| | |||| | | | | |||| | ||| | || || || | ||| | Sbjct 3026125 GCCCTTCACTG-CAGTTACA--AAGGAGTCCTCTGATTTTTTTGTCCACATGGATGCAAT 3026181 Query 162884 ATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGT 162943 | | ||||||||| || |||||||| || | || || | ||| || | || || | Sbjct 3026182 AGAAATTCTGAGGCATATAAATGGCCCTTAGAAGCCTGTCAAGCATTTCAGTTTTGTGAT 3026241 Query 162944 GTACCACGATAGAATACGC 162962 | || || || ||||| || Sbjct 3026242 GAACTACTATGGAATATGC 3026260 >seq26 Length=19343008 Score = 93.3 bits (102), Expect = 5e-14 Identities = 231/345 (67%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 ||||||||| |||||||||||| |||||||| || ||||| || | | || || Sbjct 16337711 ACCATCTCTGCATTGGTCTTAAGAGGAAAGTCTGTCCCGCAAGTGTTCAGCAGGTACCTC 16337770 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || || || | || ||| ||| |||| | |||||||| |||||||| || | Sbjct 16337771 CAGGGCAC--TGGGCTCTGTAGCAGGTCCTCCATGCAGTTCAGGTCGGCCTGCACCCTGG 16337828 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || ||| | | |||| ||||||||||| | ||| || | Sbjct 16337829 ACCAGGAAGCATAAACCACCGGAACCAGCTTGCTGGCCACAAAGACATTCTGGAAGCAGG 16337888 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTAC 162878 || | ||| || | || ||| | ||| || || | ||| || ||||| | Sbjct 16337889 AAGCGATCGCCCTGACCGCCTCTTTGAATGTTTCTGG--AGACTTCTCGTCCACGTGGAT 16337946 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 |||||| | |||||| || | || | ||| | ||| | | ||| || |||| ||||| Sbjct 16337947 GCAGTAGACATTCTGGGGCACATACACGGCTCGCAGCAGCCGCTCAAAGTTCTCGATCTT 16338006 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | || ||||| || || || || || ||||| || ||||||| Sbjct 16338007 CTCATGCACCACCATGGAGTAAGCAATAGGGAAGTCCACCTCCTC 16338051 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/283 (69%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || |||||||| || | ||||||||| ||||| || ||||| | || ||||||| Sbjct 16337195 TCAAACTTGTTGGCCAGCAGGTGATG---GTTCTGCAGCATCCAGTGCAGGTCCCCCGCC 16337251 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 ||| | | ||| | || |||| ||| || || ||| ||| || ||||||| | | Sbjct 16337252 CCGTAAATGCAGATGGCCCGCTGGTGGACCCCAGAGCAGGGCCCGTAAGGGGCCCCCTGG 16337311 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 |||||| ||||| | | ||||| || || | ||| | ||| | |||||| ||| Sbjct 16337312 CTCACATCGCCCTCATGCTGCTGCCATTTGACCAGCCTGGCGATGGAGACCATGTCTGAG 16337371 Query 162301 GTGTCGTACTT-GTACACTGACGGCACGGCTCCAGGAACACCCGGCAG--TCTCTGTAGA 162357 |||||||||| | ||| || | || ||||| || || | || | ||| | Sbjct 16337372 ATGTCGTACTTGGGGTGCTGGGGGGA-GGAGCCAGG--CATCCAGGAGGCCCGCTGCAAG 16337428 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACC 162400 |||||||| ||||| || || ||||| || || ||||| |||| Sbjct 16337429 GTAGCCCAGAGGTGCTCATCAGGACTGTAGGTGTCCTT-GACC 16337470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578380411096000