Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq102 89.7 5e-13 >seq102 Length=10499097 Score = 89.7 bits (98), Expect = 5e-13 Identities = 212/318 (67%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGAA 5399 ||| || || ||||| || | ||||||||| ||| | || |||||| ||| || Sbjct 2805012 CTCACAAATAAGCTGGGCGATGCGGTCGCCCTTTTTCACTTCAAACTTCTCTTTGCCAAA 2805071 Query 5400 GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCCAC 5459 ||| || ||||| || || | ||| |||| | | || || | ||| || ||||| || Sbjct 2805072 GTTAAACAGCACAACACCAACGTTTCCTCTGTAATCTTCATCGATGACCCCAGCTCCGAC 2805131 Query 5460 ATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCCGTA 5519 ||| | ||||| || | || | || || || || ||||| || ||||| || | Sbjct 2805132 ATCTATGAAGTGTTTGGCAGCCAAGCCCGAGCT-GGAGCCACTGTGCCATAGCACCCAGA 2805190 Query 5520 TGGCGGGTGGATCTGCAGATCGGTCAGCACTACCGCGCGCCCCATCGGCGGCAAGGTGTA 5579 || || |||||| | || ||| |||| | || | ||| || || ||| | Sbjct 2805191 GGGAAGGGCGATCTGGATGTCCGTCTGCACGAGAGCTTTCTGCATGGGTGGTGTCGTGCA 2805250 Query 5580 GTCGTAAGCGCTGTACAGGTCGTAGCCGGCCGCCTGCTCTGACCCGCGAGTGGGGATGAT 5639 || || |||||||| |||||||||||||| || | | || || ||||| ||| | | Sbjct 2805251 ATCATAGGCGCTGTAGAGGTCGTAGCCGGCGGCGCGTGCGGAGCCCCGAGTCGGGGCG-T 2805309 Query 5640 GGCATTCTGCGAGAGGCG 5657 ||| | || ||| || || Sbjct 2805310 GGCGTGCTCCGACAGCCG 2805327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447771260838600