Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq23 105 2e-19 seq283 98.7 3e-17 seq76 98.7 3e-17 seq50 98.7 3e-17 seq13 98.7 3e-17 seq17 82.4 2e-12 >seq23 Length=20549582 Score = 105 bits (116), Expect = 2e-19 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 19726742 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 19726801 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 19726802 CCCGGGTTTCGGC 19726814 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 20431346 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 20431287 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 20431286 CCGGGTTTCGGC 20431275 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||| ||||||| ||||||| |||| ||||||||||||||||||| | | Sbjct 20377515 GCCGAAGTAGCTCAGCTGGGAGAACATTAGAGTGAAAATCTAAAGGTCCCTGGTTCGAGC 20377456 Query 2829 CCGGGCTTCAGC 2840 || || |||||| Sbjct 20377455 CCAGGTTTCAGC 20377444 >seq283 Length=2061490 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 354048 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 353989 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 353988 CCGGGTTTCGGC 353977 >seq76 Length=11650222 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 5158019 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 5158078 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5158079 CCGGGTTTCGGC 5158090 >seq50 Length=14205303 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 6388257 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 6388198 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 6388197 CCGGGTTTCGGC 6388186 >seq13 Length=29432847 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1281609 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1281668 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1281669 CCGGGTTTCGGC 1281680 >seq17 Length=24977595 Score = 82.4 bits (90), Expect = 2e-12 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| || |||||||| |||||||||||||| ||||||||||||||||||||| || | Sbjct 16808656 TGGCCAAAATAGCTCAGCTGGGAGAGCATTAGGCTGAAGATCTAAAGGTCCCTGATTTGA 16808597 Query 2827 CCCCGGGCTT 2836 |||||| || Sbjct 16808596 TCCCGGGTTT 16808587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848363112075