Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq188 118 2e-21 >seq188 Length=5414077 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| ||||| ||||| | |||||||| ||| ||| || ||| ||| | ||| | | Sbjct 4137429 AGATAATTGATGGGGAGATGTACCCTCCCACCACCAAAGACACCCAAGTAGAGATGATCT 4137488 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCG 214115 || | || || ||||| | || ||||| |||| | ||| | ||||| |||| Sbjct 4137489 ACCCAGCCCATGTCCCCGAGCATGCGCGCTTCGCGGTGGGCCAGGAGGTCTTTGGCCTCG 4137548 Query 214116 TGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACG 214175 |||||||| | ||| |||| |||| ||||||||| | || |||||||| || || |||| Sbjct 4137549 TGCCCGGTCTGATGATGTATGCCACCATCTGGCTGCGGGAACACAACAGAGTGTGTGACG 4137608 Query 214176 TGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 |||| || || || || ||||| ||| | || || | | ||||||| Sbjct 4137609 TGCTTAAGCAGGAACATCCGGAGTGGGATGATGAGCGCTTATTCCAGA 4137656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723276287042400