Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq187 154 1e-32 seq158 141 7e-29 seq9 120 2e-22 seq4 107 2e-18 seq151 105 5e-18 seq45 105 5e-18 seq91 100 2e-16 seq10 84.2 2e-11 seq33 82.4 6e-11 >seq187 Length=5094135 Score = 154 bits (170), Expect = 1e-32 Identities = 288/420 (69%), Gaps = 5/420 (1%) Strand=Plus/Minus Query 43859 TTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAA 43918 |||||| |||| ||||| || ||||||| ||| ||| |||| || ||| |||||| Sbjct 5557 TTTTTTCCTGCCAGCGATGGCATAGTCAGTGAGAATCTGGTGGAGCGATTTAACCAAGAA 5498 Query 43919 GTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCAT 43978 |||||| | ||||||| || ||||| || || || || |||||||| ||||| | ||| Sbjct 5497 GTTCAAATTACAGAAGCCCGGTGTTTCTACGGCTTCCAGATTGCCATGGAAAACCTGCAT 5438 Query 43979 TCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGA 44038 ||||||||||||| || || || || || ||||| | |||| || || | | | Sbjct 5437 TCGGAAATGTACACACTCCTTATGGACACTTACATTAGAGATTCCCAAGAAAGGGAGTTT 5378 Query 44039 TTGTTTAATGCGATAGAAACAGT-ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097 | || ||||| | || || || |||| | | || | || ||||||||||| | Sbjct 5377 CTCTTCAATGCCACTGAGACCGTGGCCTGTG-TGAAGAAGAAGGCAGACTGGGCGTTGCG 5319 Query 44098 ATGGATA---AATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 |||||| | | | | | | |||||||| || || |||| |||||| Sbjct 5318 CTGGATAGGGGACAAAGAGGCCACATATGGAGAACACACGGTGGCCTTTGTCACTGTGGA 5259 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| ||||||||||| || || |||||| || || ||| | |||||||| || | || Sbjct 5258 AGGAATTTTCTTTTCTGGTTCTTTTGCGTTGATCTTCTGGCTCAAGAAACGGGGCCTCAT 5199 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTT 44274 |||||| | || ||||| || || | || || | | || ||||| | ||| || || Sbjct 5198 GCCTGGCCTCACCTTTTCCAACGAACTCATTAGCAGATACGAGGGCTTGCGTTGTGACTT 5139 >seq158 Length=6792961 Score = 141 bits (156), Expect = 7e-29 Identities = 206/291 (71%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 77392 CCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACAT 77451 |||||| || |||| ||||||| |||||| | || | ||||||||||||||||| Sbjct 1351301 CCTCCACCCATTCTTCTTCCAGCCGGGAACCCAGCTGGTGATCCCATTGATGGTGAACAT 1351360 Query 77452 GCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTT 77511 |||||| ||||| | |||||||| |||| | | | ||| ||||||| | ||||| Sbjct 1351361 GCTGTCAGTGTACAGCACCAGCTTGCTGATGTCCTGCGCCTTGGCTTGTTCTATGGCTTT 1351420 Query 77512 GGATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAAC 77571 | |||| || |||||||| || | |||||| ||||||||||| ||||| | | Sbjct 1351421 GCATGCTGCATGGATTTCTGCTCTCTGGTTGGTCTGTTGCCCAGGAAGTCTAATGCCTCC 1351480 Query 77572 ATTAAGCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCC 77631 ||| || ||||| ||||| || || || || || |||||||| || | || Sbjct 1351481 ATTTAGAGGGTGGCCTGGCCCCCAGTAAACACCGATTCCTGCTCGGGCCCTCCTCCGCCC 1351540 Query 77632 GTTTGATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACCCATGTA 77682 || |||| |||||||| ||||| || || || | ||| |||||||| Sbjct 1351541 ATTACTGGAGCAGCAGCCGTCGGTGTAAACAACGACAGAGTCTCCCATGTA 1351591 >seq9 Length=31924332 Score = 120 bits (132), Expect = 2e-22 Identities = 290/439 (66%), Gaps = 0/439 (0%) Strand=Plus/Plus Query 47212 CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTT 47271 || |||| | || || |||| || || | ||||| || ||| | |||| | || || Sbjct 22588876 CAGCGTGCTCCAGTTCCTAGGGCTCTACAAGAAATCTGGAAAACTTGTATTCTTGGGTTT 22588935 Query 47272 AGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCA 47331 ||||||||||| ||||| | | || |||||||||||| | | | || |||| Sbjct 22588936 GGACAATGCAGGCAAAACCACCCTTCTTCACATGCTCAAAGATGACAGACTGGGCCAGCA 22588995 Query 47332 TAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCAC 47391 | || ||| ||||||| || || ||| | || || |||||||| || || |||| ||| Sbjct 22588996 TGTTCCAACACTACATCCAACATCAGAAGAGCTGACGATTGCTGGGATGACGTTTACCAC 22589055 Query 47392 ATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGT 47451 |||||| | || ||||| ||||| ||| | | ||| ||||||| | | || | | Sbjct 22589056 TTTTGATCTTGGTGGACATGAGCAAGCTCGTCGGGTTTGGAAAAATTACCTACCTGCCAT 22589115 Query 47452 TGATGCTATAGTTTATATTGTAGACTGTGCAGATTTGACTAGACTGACAGAGGCAAAAAT 47511 | ||| || || | | || || ||||||||| || | || | || | ||| | Sbjct 22589116 TAATGGGATTGTCTTCCTGGTGGATTGTGCAGATCATTCTCGCCTCATGGAATCCAAAGT 22589175 Query 47512 CGAATTCGATGCGTTGTTAAACGATGAACTGTTACACGATGTTCCTATTTTAGTGTTGGG 47571 || | ||| ||| | | |||||| || | |||| || || | | ||||| Sbjct 22589176 TGAGCTGAATGGGTTAATGACTGATGAAACAATATCCAATGTGCCAATCCTTATCTTGGG 22589235 Query 47572 CAATAAAATCGACAAACAAAACGCGATAGGAGAAGTTGAACTTCGCCATATATTTGGAAT 47631 || |||||||||| | | | || || | |||| |||| || | |||||||| | Sbjct 22589236 AAACAAAATCGACAGAACAGATGCAATCAGCGAAGAAAAACTCCGTGAGATATTTGGGCT 22589295 Query 47632 ATACGGACAAACTTCAAGA 47650 || ||||| ||| || || Sbjct 22589296 TTATGGACAGACTACAGGA 22589314 >seq4 Length=36760021 Score = 107 bits (118), Expect = 2e-18 Identities = 277/422 (66%), Gaps = 0/422 (0%) Strand=Plus/Plus Query 47229 TAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAAAAA 47288 |||| || || | ||||| || ||| | |||| | || || ||||||||||| |||| Sbjct 12050138 TAGGGCTGTACAAGAAATCTGGAAAACTTGTATTCTTGGGTTTGGACAATGCAGGCAAAA 12050197 Query 47289 CGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACATTACATC 47348 | | | || |||||||||||| | | | || ||||| || ||| |||||| Sbjct 12050198 CCACCCTTCTTCACATGCTCAAAGATGACAGACTGGGCCAGCATGTTCCAACACTACATC 12050257 Query 47349 CGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTTGATTTAGGAGGAC 47408 | || || ||| | || || |||||||| || | |||| ||| || ||| | || |||| Sbjct 12050258 CAACATCAGAAGAGCTGACGATTGCTGGGATGATGTTTACCACTTTCGATCTTGGTGGAC 12050317 Query 47409 ACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGATGCTATAGTTTATA 47468 | ||||| ||| | | ||| ||||||| | | || | || ||| || || | Sbjct 12050318 ATGAGCAAGCTCGTCGGGTTTGGAAAAATTACCTACCTGCCATTAATGGGATTGTCTTCC 12050377 Query 47469 TTGTAGACTGTGCAGATTTGACTAGACTGACAGAGGCAAAAATCGAATTCGATGCGTTGT 47528 | || |||||||||||| || | || | || | ||| | || | ||| ||| Sbjct 12050378 TGGTGGACTGTGCAGATCATTCTCGCCTCATGGAATCCAAAGTTGAGCTGAATGGGTTAA 12050437 Query 47529 TAAACGATGAACTGTTACACGATGTTCCTATTTTAGTGTTGGGCAATAAAATCGACAAAC 47588 | | |||||| || | |||| || || | | ||||| || ||||| |||| | Sbjct 12050438 TGACTGATGAAACAATATCCAATGTGCCAATCCTTATCTTGGGAAACAAAATAGACAGAA 12050497 Query 47589 AAAACGCGATAGGAGAAGTTGAACTTCGCCATATATTTGGAATATACGGACAAACTTCAA 47648 | | || || | |||| |||| || | |||||||| | || ||||| ||| || Sbjct 12050498 CAGATGCAATCAGCGAAGAAAAACTCCGTGAGATATTTGGGCTTTATGGACAGACTACAG 12050557 Query 47649 GA 47650 || Sbjct 12050558 GA 12050559 >seq151 Length=7174217 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | ||||||| || ||||| || || || || ||||| || ||||| Sbjct 1180845 CAAGAAGTTCAAATTACAGAAGCCCGTTGTTTCTACGGCTTCCAGATTGCTATGGAAAAC 1180904 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || |||||||||||||||||||| || || || || ||||| |||||| Sbjct 1180905 ATACATTCGGAAATGTACAGTCTGCTTATTGACACTTACATTAAAGAT 1180952 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | |||||||||||| |||||||| || || |||||| Sbjct 1182421 GGAGAACGCGTGGTGGCCTTTGCCGCTGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCG 1182480 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | || || ||| | ||||||||||| | |||||||| | || ||||| || || Sbjct 1182481 TCAATCTTCTGGCTCAAGAAACGAGGACTCATGCCTGGCCTCACCTTTTCCAACGA 1182536 >seq45 Length=14289500 Score = 105 bits (116), Expect = 5e-18 Identities = 208/305 (68%), Gaps = 2/305 (1%) Strand=Plus/Plus Query 47181 TCATGATTAATTTCATAGTGCATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTAT 47239 |||| |||||| || | || |||||| | || ||| | |||||||||||| | ||| Sbjct 9868603 TCATATTTAATTGGATT-TACAATGGTTTCAGCAGTGTGCTACAATTTTTAGGATTATAT 9868661 Query 47240 GAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTC 47299 | ||| | || ||| | ||||||| || || || ||||| ||||||| |||| || Sbjct 9868662 AAGAAAACTGGTAAACTGGTATTTCTTGGATTGGATAATGCCAGAAAAACAACATTGCTA 9868721 Query 47300 CACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAA 47359 || ||||| ||| | | | | | | || ||| ||| | ||||| || || ||| Sbjct 9868722 CATATGCTAAAAGATGACAGACTTGGACAACACGTCCCAACACTGCATCCCACTTCAGAA 9868781 Query 47360 CAACTAACAATTGCTGGCATAACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCG 47419 |||| || || || | || || |||| ||||||||| | || || || | ||||| Sbjct 9868782 GAACTGACTATAGCCAGTATGACTTTTACAACATTTGATCTGGGTGGTCAGGTACAAGCC 9868841 Query 47420 CGTAGAATGTGGCAAAATTATTTTCATGTCGTTGATGCTATAGTTTATATTGTAGACTGT 47479 || ||| | ||| |||| || ||| || | ||| || || | | | || |||||| Sbjct 9868842 CGAAGAGTTTGGAAAAACTACCTTCCTGCTATCAATGGCATTGTATTTCTGGTGGACTGT 9868901 Query 47480 GCAGA 47484 ||||| Sbjct 9868902 GCAGA 9868906 >seq91 Length=12063278 Score = 100 bits (110), Expect = 2e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 77438 TTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCT 77497 |||||||||||||||||||||||||| | |||||||| |||||| | ||||| ||| Sbjct 2044310 TTGATGGTGAACATGCTGTCTGTGTACAGCACCAGCTTGCTGATTTCTTGCTCCTTGGCT 2044251 Query 77498 TGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACA 77557 |||| | |||||| |||| || |||||||| || | ||||| ||||| ||| | Sbjct 2044250 TGTTCTATGGCTTTGCATGCTGCATGGATTTCTGCTCTCTGGTGGTTCTGTCACCCAGGA 2044191 Query 77558 AGTCGCTCTGCAACATTAAGCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCGG 77617 |||| | ||||| || |||| | | ||||| || | | || || ||| || Sbjct 2044190 AGTCTAATGCCTACATTTAGAAGGTGGCAAGACCCCCAGTAAATGTTGATTCCTGCTTGG 2044131 Query 77618 GCTTGTTTCTGTCCGTTTGATAAGCAACAGCCGTCAGTGTAGA 77660 || | || || || |||| ||||| |||||||||| Sbjct 2044130 GCCCTTGTCCACCCATTACTGGAGCAGCAGCCATCAGTGTAGA 2044088 >seq10 Length=29551940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 168/248 (68%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||| | || ||| | |||||||||||| | ||| | ||| | || ||| | | Sbjct 8475252 CAATGGTTTCAGCAGTGTGCTACAATTTTTAGGATTATATAAGAAAACTGGTAAATTGGT 8475311 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319 |||||| || || || ||||| |||||||| |||| | || || | ||| | | | Sbjct 8475312 ATTTCTTGGTTTGGATAATGCCGGAAAAACAACATTGTTACATGTGTTAAAAGATGACAG 8475371 Query 47320 CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCAT 47379 | | | || ||| ||||| | ||| || || ||| | || || ||||| || || Sbjct 8475372 ACTTGGACAACACGTCCCAACATTGCCTCCCACTTCAGAAGAGCTGACTATTGCCGGTAT 8475431 Query 47380 AACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTA 47439 || |||| | ||| ||| | || ||||| | ||||| || || | ||| |||| || Sbjct 8475432 GACTTTTACAAGATTCGATCTGGGTGGACATGTGCAAGCCCGACGAGTTTGGAAAAACTA 8475491 Query 47440 TTTTCATG 47447 ||| || Sbjct 8475492 CCTTCCTG 8475499 >seq33 Length=18282273 Score = 82.4 bits (90), Expect = 6e-11 Identities = 115/162 (71%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 299071 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 299012 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 |||| | |||||| || ||||||||||||||||| || |||| ||| | Sbjct 299011 AGCATGGCTGGCAGCACTGGAGTTCACGACACTGTTGTCAATCAGCTGTTGTCCAAAATC 298952 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | || ||||| || || |||| ||||| ||| Sbjct 298951 GATGGGGTAGAGCAGCTGAACAACATCCTAGTCATTGGTATG 298910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397421438095675