Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq84 91.5 2e-13 >seq84 Length=11882382 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||||||||||||||| | ||||| ||| ||||| | ||| ||| |||| Sbjct 856249 GCATCAATCTCATCAATGAATAAGATACAAGGTGCATTTTTCCTGGCCATTACAAACGTG 856308 Query 11690 TCGCGAACCCTT-TTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748 || || |||||| |||| || |||||||||||| |||| | || | | | | || Sbjct 856309 TCACGTACCCTTGCTGGC-CCAACACCAACAAACCTCTCTAGGAACTCCG-ACCCGTTCA 856366 Query 11749 CTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 | | ||||| || || | | || || || ||||||| |||||| || ||||| || | Sbjct 856367 CGGTAATGAAGGGCACGCTGGCCTCCCCAGCCATGGCTCTGGCGAGAAGCGTCTTGCCGG 856426 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 |||| || | || | ||| | ||| || ||||| ||||| || Sbjct 856427 TACCAGGGTGACAAGTGAGCATGGCTCCCTTTGGGATTTTGGCTCC 856472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627975987396000