Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq80 95.1 1e-14 seq6919 82.4 9e-11 >seq80 Length=11829778 Score = 95.1 bits (104), Expect = 1e-14 Identities = 168/240 (70%), Gaps = 10/240 (4%) Strand=Plus/Plus Query 9696 TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTT 9755 ||||||| || ||| ||||||||||||||| |||||| | ||| | ||||| | Sbjct 137783 TTCCCACTGCGTCAGTCTCATCAATGAAGAGGATGCAAGAGGCATTCTTCCGAGCAAGGG 137842 Query 9756 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--C 9813 |||| || || || || || | ||||||||||||||||||||| | ||| | | | Sbjct 137843 CAAATAGGTCTCGCACCCGAGCCGGGCCCACACCAACAAACATCTCGAGAAACTCAGACC 137902 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGG-CTCG-----GGCGAG 9867 | | ||| | |||||||||||| || | ||| || || ||| || | ||| | Sbjct 137903 CACTG-ACAGT-GATGAAGGGGACTTTGGCTTCCCCAGCCGTGGCCTTGGCCTTGGCCAA 137960 Query 9868 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || ||||| || || || || ||||| ||| | |||||| |||||| ||||| || Sbjct 137961 TAGTGTCTTCCCAGTGCCAGGAGGACCCGTGAGAATGGCACCCTTTGGAATTTTGGCTCC 138020 >seq6919 Length=1122 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 95170 AATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAG 95229 ||||||||||||||||||||||| ||| || || ||||||||||||||||| || ||| Sbjct 487 AATCCATTTGACTTCATGGAGAATATTTCTCTGGAAGGGAAGACAAACTTCTTTGAGAAG 546 Query 95230 AGGGTTGGGGACTAT 95244 || || || || ||| Sbjct 547 AGAGTGGGCGAGTAT 561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583208780427400