Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq74 116 3e-21 seq3487 91.5 1e-13 >seq74 Length=13126430 Score = 116 bits (128), Expect = 3e-21 Identities = 421/652 (65%), Gaps = 15/652 (2%) Strand=Plus/Plus Query 111647 CAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATT 111706 ||||| |||| ||||| || ||||| || || | || | ||| |||||| | Sbjct 9227864 CAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGGCCTTGGTTCTCGTTGAAGCTGAGTCT 9227923 Query 111707 GTAAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCC 111766 | |||| |||||||| | || | ||| || ||||| | | || | || || | Sbjct 9227924 TCAGCGGCTTGATGTGATTCAGGTAGATATGTGCGTCTCCCAAAGTGTGCACGAAGTCTC 9227983 Query 111767 AAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGT 111826 |||| || || |||| ||| || | |||||| ||||| || | | || || |||| Sbjct 9227984 CTGGCTTCAGGCCTGTGACGTGCGCGACCATGTAGGTGAGCAGCGCGCAGCTGGCGATGT 9228043 Query 111827 TAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTAT 111886 | || || || || |||||||| || || || | || || ||||| || || || | Sbjct 9228044 TGAAGGGTACGCCCAGGCCCATGTCCCCTGACCGCTGGTACAGCTGGCAGGACAGCTCCC 9228103 Query 111887 TTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAA 111946 | ||| || || || || || || || ||||||| |||||| | | | Sbjct 9228104 CGTTCACCACGTAGAACTGGCACAGGGTGTGGCAGGGAGGCAGCGCCATCAGAGGGAGAT 9228163 Query 111947 A----GGGTCCCCATGCACACATGATCATCCTTCTGCTGT-AG---CGATTATGTTCAAT 111998 |||| || | ||||||||||| ||||||||| || || || || || || Sbjct 9228164 CTTTTGGGTTCC-AGGCACACATGATGATCCTTCTGTCGTTAGGGTCGGTTTTG----AT 9228218 Query 111999 GTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACATCC 112058 | || || || ||| |||||||| | |||| ||| | ||||| | | | Sbjct 9228219 GGTGTTGATCACGTTCTGCAGCTGGTCAACTCCTTGACCCGAGTAATCTGAGTCCGTATC 9228278 Query 112059 AGTGTATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGG 112118 |||| |||||| | || ||||| ||||| ||||| | || ||||| || ||| Sbjct 9228279 TTTGTAGTCTGCCCCGAAATGCCTCCACTGGAAGCCATAGACGGGGCCCAGGTC-CCCTT 9228337 Query 112119 GGCTGTATCTGGAAATTGCTCT-CTATTCAACAAATCACTTCTAATATGAGGATTCCAAA 112177 || || |||| | || | || ||||| | || | || ||| | Sbjct 9228338 CTTTGCGGCTAGAAAACCCCAGGCTGTCCAGGAAATCCCGGGACCCATTGGCATCCCAGA 9228397 Query 112178 TCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCA 112237 ||||||||||||| ||||| | ||| | |||||||| ||||| | |||||||| |||| Sbjct 9228398 TCTTCACTCCTTTGGATGACAGCTCCTTGGCATTTGTAGATCCCTTGATAAACCACAGCA 9228457 Query 112238 ATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 ||||||| || || |||||| | || | || || || ||||| ||||| Sbjct 9228458 GCTCTTCCAGAATACCCTTCCAGAATACACGCTTGGTGGTCAGCAGGGGAAA 9228509 >seq3487 Length=3565 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 112173 CCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCA 112232 ||| |||||||||||||| || || |||||| | |||||||| ||||| | |||||||| Sbjct 1422 CCAGATCTTCACTCCTTTGGAGGACAACTCTTTGGCATTTGTAGATCCCTTGATAAACCA 1363 Query 112233 TAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAAAGA 112292 |||| || |||| ||| || |||||| ||| | | || || ||||| |||| | Sbjct 1362 CAGCAGCTCCTCCAGAACACCCTTCCAGAGCACACGCTAGGTCGTCAGCAGGGGAA---A 1306 Query 112293 ATCATGTAG 112301 |||||||| Sbjct 1305 TTCATGTAG 1297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391911517268005