Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq187 87.8 2e-12 seq151 84.2 2e-11 >seq187 Length=5094135 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT-ATTTTCTGGCTCAAAAAGCGTGG 60061 ||||||||||| ||||| ||||| || || || | | || ||||||||||| || || || Sbjct 5263 GTGGAAGGAATTTTCTTTTCTGGTTCTTT-TGCGTTGATCTTCTGGCTCAAGAAACGGGG 5205 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 ||||||||| ||||| | || |||||||| || ||| | | |||||||| Sbjct 5204 CCTCATGCCTGGCCTCACCTTTTCCAACGAACTCATTAGCAGATACGAGGGC 5153 >seq151 Length=7174217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||||| |||||||| ||||| || || || | | || ||||||||||| || || || Sbjct 1182448 GTGGAAGGCATCTTCTTTTCTGGTTCTTT-TGCGTCAATCTTCTGGCTCAAGAAACGAGG 1182506 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 |||||||| ||||| | || |||||||| || ||| | | ||||||| Sbjct 1182507 ACTCATGCCTGGCCTCACCTTTTCCAACGAACTCATTAGCAGAGACGAGG 1182556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548475878444400