Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq151 95.1 1e-14 seq59 93.3 5e-14 seq56 87.8 2e-12 >seq151 Length=7174217 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||||||| || | ||| || ||||| | ||||||||||| ||||| || ||||| Sbjct 1182554 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCTCGTTTCTTG 1182495 Query 74832 AACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| ||||| | | || ||| ||||| |||||||||||||| ||| |||||||| Sbjct 1182494 AGCCAGAAGATTGACGCAAAAG-AACCAGAAAAGAAGATGCCTTCCACAGCGGCAAAGGC 1182436 Query 74891 GACAAGGCGTT 74901 || | ||||| Sbjct 1182435 CACCACGCGTT 1182425 >seq59 Length=13685316 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||| ||||| || | ||| |||||||| |||||||| ||||| ||||||||||| Sbjct 5847822 CGTGAAAATGTAACGAGGGCTTGCCGCATCTTTGCCACCGTGAAGCCGAGTTCCAAACTG 5847881 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||| ||||| || | ||| | || || ||||| || ||||| ||||||||||| Sbjct 5847882 ACCAATGGGCTGAAGCAAGTTAATATTATTACTTCCCACAAAGTTCTGGGCCAAATTCAC 5847941 Query 152148 AATCGT 152153 ||| || Sbjct 5847942 AATAGT 5847947 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| |||||| ||||| |||||||| ||| || || || || || Sbjct 5847823 GTGAAAATGTAACGAGGGCTTGCCGCATCTTTGCCACCGTGAAGCCGAGTTCCAAACTGA 5847882 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | || || ||||||||||| || ||||| || ||| Sbjct 5847883 CCAATGGGCTGAAGCAAGTTAATATTATTACTTCCCACAAAGTTCTGGGCCAAATTCACA 5847942 Query 117425 ATCGT 117429 || || Sbjct 5847943 ATAGT 5847947 >seq56 Length=12864825 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||| ||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 9434695 GTGAAGATATATCGAGGACTAGCAGAATCCTTGCCACCGTGCAGCCTGGTACCAAACTGA 9434754 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 ||| ||| | | |||||| || || ||| ||| || ||||||||||||||||| Sbjct 9434755 CCAATGGGTTGCAAGAGGTTCAGATTATTGCTGCCTACAAAATTCTGAGCCAAATT 9434810 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || |||| || |||| |||||||||||| || | ||||| || || Sbjct 9434695 GTGAAGATATATCGAGGACTAGCAGAATCCTTGCCACCGTGCAGCCTGGTACCAAACTGA 9434754 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||| | || | |||||||||||| || ||| ||| ||||| || |||||||| |||| Sbjct 9434755 CCAATGGGTTGCAAGAGGTTCAGATTATTGCTGCCTACAAAATTCTGAGCCAAATTGA 9434812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547167195173000