Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq26 147 3e-30 seq95 116 5e-21 >seq26 Length=19343008 Score = 147 bits (162), Expect = 3e-30 Identities = 612/957 (64%), Gaps = 34/957 (4%) Strand=Plus/Minus Query 13604 GGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCT 13663 || ||||||||| | |||||| ||||| | |||||| | | ||| ||| | Sbjct 16338130 GGCAGACTACGTCACCATGACCAGAGACTGTGAGGCCTTTAAGGCCCAGAGGAGGT---T 16338074 Query 13664 CGTGAGGC---CCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGAT 13720 |||| || | |||||| || ||||| || || || || || ||||| || ||| | Sbjct 16338073 CGTGCAGCTTTCGCTGAGCAAAGAGGAGGTGGACTTCCCTATTGCTTACTCCATGGTGGT 16338014 Query 13721 CCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCT 13780 || | |||||||||| || ||||| || ||| | ||| | || | || ||||| | Sbjct 16338013 GCATGAGAAGATCGAGAACTTTGAGCGGCTGCTGCGAGCCGTGTATGTGCCCCAGAATGT 16337954 Query 13781 CTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCAT 13840 ||||||| ||||||||||| ||||| || |||| || ||| ||| || Sbjct 16337953 CTACTGCATCCACGTGGACGAGAAGTCTCCAGAAACATTCAAAGAGGCGGTCAGGGCGAT 16337894 Query 13841 CGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTC 13900 ||| ||||||| || || ||||| | |||| ||||| || | || Sbjct 16337893 CGCTTCCTGCTTCCAGAATGTCTTTGTGGCCAGCAAGCTGGTTCCGGTGGTTTATGCTTC 16337834 Query 13901 CTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAA 13960 |||| | |||||||||||||| | ||||||| ||||||| ||| || Sbjct 16337833 CTGGTCCAGGGTGCAGGCCGACCTGAACTGCATGGAGGACCTGCTACAGAGCCCAGTGCC 16337774 Query 13961 GTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGAT 14020 |||||||||||||| ||| ||||||| ||||| || || |||||||| ||||| Sbjct 16337773 CTGGAGGTACCTGCTGAACACTTGCGGGACAGACTTTCCTCTTAAGACCAATGCAGAGAT 16337714 Query 14021 CGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA- 14079 || | ||| || ||| || ||| |||||| ||||| || || |||| Sbjct 16337713 GGTCCAGGCCCTTAAGATGTTGAACGGGAAGAACAGTATGGAGTCAGAA---ATACCCAG 16337657 Query 14080 --ACCACAAGCTGCACCGCATCAGGAAGAGGCAC---GTGGTGGCCAGCGGCGGCGTGGT 14134 | |||| |||| ||||| ||| |||||| || | | | | Sbjct 16337656 TGAATACAAAAAAACCCGCT---GGAAGTACCACTATGTGGTGA--AG----GACACGCT 16337606 Query 14135 GGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAA 14194 | || ||| |||||| |||| || || || | | |||| || | || || Sbjct 16337605 GTACATGACCAACAGGAAGAAGGGTCCTCCCCCTAATAATGTGACCATGTTCACCGGCAA 16337546 Query 14195 CGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGC 14254 ||| ||| | | || | || || ||||| | |||| | || || || | Sbjct 16337545 CGCCTACATCGTGGCTTCTCGAGACTTCGTTCATCACGTCTTGAATAACC--CCAAATCC 16337488 Query 14255 C--CTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACC 14312 | | ||| || | ||| || ||||||| ||||| || || |||||||| ||||| ||| Sbjct 16337487 CGACAGCTGATCGAATGGGTCAAGGACACCTACAGTCCTGATGAGCACCTCTGGGCTACC 16337428 Query 14313 GTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCG 14372 ||||| | | | ||| ||| || |||| ||| ||||||||||| ||| Sbjct 16337427 TTGCAGCGGGCCTCCTGGATGCCTGGCTCCTCCCCCCAGCACCCCAAGTACGACATCTCA 16337368 Query 14373 GACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAA 14432 |||||| ||| | |||| | ||||| ||||| | | ||||| ||| | | | Sbjct 16337367 GACATGGTCTCCATCGCCAGGCTGGTCAAATGGCAGCAGCATGAGGGCGATGTGAGCCAG 16337308 Query 14433 GGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCC 14492 ||||||| ||| ||| ||| || ||||| | ||||||||||| | |||| | Sbjct 16337307 GGGGCCCCTTACGGGCCCTGCTCTGGGGTCCACCAGCGGGCCATCTGCATTTACGGGGCG 16337248 Query 14493 GGCGACGTGAAGTGG---CTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || ||| || | ||| ||| ||| | | |||||| | ||||||||||| ||| Sbjct 16337247 GGGGACCTGCACTGGATGCTGCAGAAC---CATCACCTGCTGGCCAACAAGTTTGAC 16337194 >seq95 Length=11218802 Score = 116 bits (128), Expect = 5e-21 Identities = 572/899 (64%), Gaps = 20/899 (2%) Strand=Plus/Minus Query 13696 TTCCC-ATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTG 13754 ||||| || || || || || ||| | || ||||| || || ||| | || | || || Sbjct 6781418 TTCCCGATTGCATATTCCATAGTGGTTCATCACAAAATTGAAATGCTTGACAGGCTTCTA 6781359 Query 13755 AGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGAC 13814 |||||||| || || ||||| |||| ||| |||| |||||| ||||| | ||| Sbjct 6781358 AGGGCCATTTATATGCCTCAGAATTTCTATTGCATCCATGTGGACAGAAAGTCAGAGGAC 6781299 Query 13815 GAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCAC 13874 ||| | | || || |||||| || ||| || || ||||| Sbjct 6781298 TCCTTCGTAGCCGCAGTGAAGGGCATCGCATCCTGTTTCAGGAATGTCTTTGTGGCCAGT 6781239 Query 13875 CGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATG 13934 | | || | |||||| || | || ||||| || |||||||| ||||||| ||||||| Sbjct 6781238 CAGTTGGAGAGCGTGGTCTATGCATCATGGAGCCGGGTGCAGGCTGACCTCAACTGCATG 6781179 Query 13935 TCGGACCTGGAC-GCCTCCCCCGTCAAG--TGGAGGTACCTGCTCAACCTGTGCGGGATG 13991 |||||| || | | || || |||| |||| || |||| || || |||||| Sbjct 6781178 AAGGACCTCTACAGAATGA---GTGCAGGCTGGAAGTACTTGATCAATCTTTGTGGGATG 6781122 Query 13992 GACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAG 14051 || || || | || ||||||||||| || || || ||| ||| || | || | Sbjct 6781121 GATTTTCCTATTAAAACCAACCTGGAAATGGTCAGGAAGCTCAAGTCCTTCATGGGAGAA 6781062 Query 14052 AACGCCCTGGAGAGCGAGGGCATGCCCAACCACAA-GCTGCACCGCATCAGGAAGAGGCA 14110 ||| || || | ||| ||||| ||| || || | | | |||| |||| Sbjct 6781061 AACAGTCTAGAAACAGAGAAGATGCCATCCCATAAAGCAGAAAGGT----GGAAAAGGCG 6781006 Query 14111 CGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCT 14170 || | || || || |||| |||| || | ||| | | | | || || Sbjct 6781005 TTATGTAGTCATCGATGGGAAGGTGACAGACACAGGGACCCCCAAAACGCAGTCTCCACT 6780946 Query 14171 CAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTT 14230 || | || || || | || | || || |||| ||||| | ||| || |||| || Sbjct 6780945 CAAAACACCTATTTTCTCAGGGAGTGCCTATTTTGTGGTCAGCAGGGGGTATGTGGGCTA 6780886 Query 14231 CGTCCTCAAGGACGAGCCGGTGGCCCT--GCTCATGCACTGGTTCGAGGACACGTACAGC 14288 ||| || | |||| | | || | ||||| | ||| ||||||| |||||| Sbjct 6780885 CGTGCTAGAAAACGAA--GATATCCAAAAGTTCATGGAGTGGGCACAGGACACCTACAGC 6780828 Query 14289 CCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCCGGGGGGATCC-C 14347 || |||||| |||| |||||||| || ||||| || | || |||| || || | Sbjct 6780827 CCAGACGAGTACCTCTGGGCCACAGTACAGAGG--GTCCCTGAGGCCCCAGGTTCTCTGC 6780770 Query 14348 CGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGC 14406 | || | | |||||| ||| || |||||| ||| | |||||| |||||||||| Sbjct 6780769 CCTTGAGCCACAAGTATGACCTATCTGACATGCAGGCTGTTGCCAGGTTTGTCAAGTGGC 6780710 Query 14407 ACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACG 14466 | ||| ||| ||||| | || | || || | ||||| || ||||| || | ||| | Sbjct 6780709 AGTACCTCGAAGGGGACGTTAATGAGGGTGCACCCTACCCCCCCTGCGATGGTACCCATG 6780650 Query 14467 TCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGAGCGTCCCGCACC 14526 | | | | | ||||| || || | || ||| ||| ||| || | || | ||| Sbjct 6780649 TGCGCAGCGTGTGCATTTTTGGAGCTGGTGACTTGACCTGGATGCTGCGCAAACACCACT 6780590 Query 14527 TGTTCGCCAACAAGTTCGACGACGAGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAG 14585 | || ||||| ||||| ||| || |||| ||||| | | ||| |||||||| Sbjct 6780589 TCTTTGCCAATAAGTTTGACATGGATGTGGACCTCTTCGCTATCCAGTGTTTGGACGAG 6780531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658680448697600