Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq164 82.4 5e-11 >seq164 Length=5921534 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| ||||| |||||||| ||||||||||| || || | || || ||| | Sbjct 5181022 AAGATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACGCTCGAGGTTGAACCC 5181081 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||| | || || || || || || || || ||||| |||| || Sbjct 5181082 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 5181141 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| || | || ||||| || || || |||| || | ||| | |||||| |||||| Sbjct 5181142 CAGCAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGTACCTTGTCTGATTAC 5181201 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| ||| ||| | ||| | || ||| | | ||||| || Sbjct 5181202 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTCCGTGGTGG 5181251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355831454984145