Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq187 143 2e-29 seq151 104 2e-17 seq1718 95.1 1e-14 seq148 86.0 5e-12 seq102 84.2 2e-11 >seq187 Length=5094135 Score = 143 bits (158), Expect = 2e-29 Identities = 370/565 (65%), Gaps = 24/565 (4%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 ||| | || |||||| |||| || |||| ||||||||| |||||||| ||||| || | Sbjct 5133 CACACGAAGTCACAACGCAAGCCCTCGTATCTGCTAATGAGTTCGTTGGAAAAGGTGAGG 5192 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | || | || || ||||| || || ||||| || ||||||||||| Sbjct 5193 CCAGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATCAACGCAAAAGAACCAGAAAAGAAA 5252 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 || ||||| || | | |||| || || | || | | | ||||||| Sbjct 5253 ATTCCTTCCACAGTGACAAAGGCCACCGTGTGTTCTCCATATGTGGCCTCTTTGTCCCCT 5312 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT- 4786 ||||| || ||||||| || || ||||| || || | | || | | || || Sbjct 5313 ATCCAGCGCAACGCCCAGTCTGCCTTCTTCTTCACACAGGCCACGGTCTCAGTGGCATTG 5372 Query 4787 -AAATAATTTACTTTTTTCAAATGGG--TCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 | | || | | ||| | |||| ||| ||| |||||||| || || || | || Sbjct 5373 AAGAGAAACTCCCTTTCT----TGGGAATCTCTAATGTAAGTGTCCATAAGGAGTGTGTA 5428 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 |||||| ||||| | ||||| || |||||||| || ||||| || || | |||||||| Sbjct 5429 CATTTCCGAATGCAGGTTTTCCATGGCAATCTGGAAGCCGTAGAAACACCGGGCTTCTGT 5488 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | ||||||||| | ||||| || || | || || | ||||| || || ||||| Sbjct 5489 AATTTGAACTTCTTGGTTAAATCGCTCCACCAGATTCTCACTGACTATGCCATCGCTGGC 5548 Query 4964 TGCAA----------------AAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAG 5007 | || |||| | | || || ||||||||||| || |||| Sbjct 5549 AGGAAAAAAAAATATAATAATAAAAAGTTAGAATGTGTGATATAAAGTATCTCTCTTCAG 5608 Query 5008 GCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAA 5067 ||| || || |||||| | | ||||| | | ||| ||||| || | ||||||| Sbjct 5609 CCTTCAGGGCTTCCCAGTGCTGAATGTCTTTGGAAAGATCGACTTCCTCCGCTGTCCAAA 5668 Query 5068 ACGACGCTTCCGCTTTTTTGTACAT 5092 | || || || ||||| || |||| Sbjct 5669 AAGAAGCCTCGGCTTTCTTACACAT 5693 >seq151 Length=7174217 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || || |||||||| |||||||| ||||| |||||| Sbjct 1180951 TCTTTAATGTAAGTGTCAATAAGCAGACTGTACATTTCCGAATGTATGTTTTCCATAGCA 1180892 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || ||||| || || | |||||||| | ||||||||| | | ||||| Sbjct 1180891 ATCTGGAAGCCGTAGAAACAACGGGCTTCTGTAATTTGAACTTCTTGGCTAAATC 1180837 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| |||||||| ||||| || | || ||||| | |||| || || Sbjct 1182554 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCTCGTTTCTTG 1182495 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || | ||||| || ||||||||||| |||||||| || |||||||| || Sbjct 1182494 AGCCAGAAGATTGACGCAAAAGAACCAGAAAAGAAGATGCCTTCCACAGCGGCAAAGGCC 1182435 Query 4692 AC 4693 || Sbjct 1182434 AC 1182433 >seq1718 Length=6852 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| |||||||| || || || || ||||| ||||||||||| || || | ||||| || Sbjct 6232 TACCAAGTTTTCATTGACAATTCCATCACTTGCTGCAAAAAAGGCTAAGATGTGAGAAAT 6291 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 |||||| | || || ||||| || || |||||||| |||| ||| || | || |||||| Sbjct 6292 AAAGTATTTCTCATCCGGCTTGAGCTTGTTCCAGTGAGGCAGATCCTTTGATAGATCAAC 6351 >seq148 Length=7051472 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 ||||| || || ||||| || || |||||||| ||||| |||||||| ||||| || ||| Sbjct 5157180 TGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCTCC 5157121 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 5157120 ATAAAATCAAAGGGATT 5157104 >seq102 Length=10499097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 31799 CCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATC 31858 || || |||||||| || | | ||||| || || || ||||| | |||||||| || Sbjct 2805193 CCCTCTGGGTGCTATGGCACAGTGGCTCC-AGCTCGGGCTTGGCTGCCAAACACTTCATA 2805135 Query 31859 GACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTT 31918 || || || || || || || ||| ||| || |||||||||||||| ||||| ||||| Sbjct 2805134 GATGTCGGAGCTGGGGTCATCGATGAAGATTACAGAGGAAACGTTGGTGTTGTGCTGTTT 2805075 Query 31919 AATTTTGG 31926 || ||||| Sbjct 2805074 AACTTTGG 2805067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427012464700955