Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq74 369 3e-97 seq107 237 1e-57 seq109 223 3e-53 seq82 196 4e-45 seq75 138 8e-28 seq3487 96.9 3e-15 >seq74 Length=13126430 Score = 369 bits (408), Expect = 3e-97 Identities = 523/731 (72%), Gaps = 6/731 (1%) Strand=Plus/Plus Query 26998 ACTGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCT 27057 || |||||| | || | |||| ||| || || | ||| || ||||| ||| || || Sbjct 9227782 ACAGCCATCTCCTTCTTAATGGAGGGGTGGGGATTGTACCCTTCCAGCTGGAAGTCTTCA 9227841 Query 27058 GCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAG-TGTGGGAAAGGGTCT 27116 || | ||||| || | |||| || | | || | || | ||||||||| || Sbjct 9227842 GCTGTGAAGTCATCGATTGTCTCAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGGC-CT 9227900 Query 27117 GGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTC 27176 || || | | ||||||||||||||||| | | ||||| |||||||| || ||||| Sbjct 9227901 TGGTTCTCGTTGAAGCTGAGTCTTCAGCGGCTTGATGTGATTCAGGTAGATATGTGCGTC 9227960 Query 27177 TCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 27236 ||||| ||||| || || ||||| || | || || |||||||| || | |||||| || Sbjct 9227961 TCCCAAAGTGTGCACGAAGTCTCCTGGCTTCAGGCCTGTGACGTGCGCGACCATGTAGGT 9228020 Query 27237 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 27296 ||| || | | ||||||||||||| |||||||| || || ||||||||||| |||| ||| Sbjct 9228021 GAGCAGCGCGCAGCTGGCGATGTTGAAGGGTACGCCCAGGCCCATGTCCCCTGACCGCTG 9228080 Query 27297 GTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGG 27356 ||| ||||| || || ||||| || | ||||| ||||| || | || |||||| || Sbjct 9228081 GTACAGCTGGCAGGACAGCTCCCCGTTCACCACGTAGAACTGGCACAGGGTGTGGCAGGG 9228140 Query 27357 AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC 27416 ||| || ||||| || | ||||| ||||||||||| |||| |||||| | ||||| Sbjct 9228141 AGGCAGCGCCATCAGAGGGAGATCTTTTGGGTTCCAGGCACACATGATGATCCTTCTGTC 9228200 Query 27417 TTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 27476 | |||| | | ||||| || | |||| |||||||| || || || ||||| Sbjct 9228201 GTTAGGGTCGGTTTTGATGGTGTTGATCACGTTCTGCAGCTGGTCAACTCCTTGACCCGA 9228260 Query 27477 GTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACAC 27536 ||| ||| | | || |||| ||||| |||||||||||||| ||||| || || || Sbjct 9228261 GTAATCTGAGTCCGTATCTTTGTAGTCTGCCCCGAAATGCCTCCACTGGAAGCCATAGAC 9228320 Query 27537 CGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG--AAGCCCCTCTTGTCCAAAAAGTCTCTG 27594 || |||||||| || |||| | ||| | || ||| |||||| || || | | Sbjct 9228321 GGGGCCCAGGTCCCCTTCTTTGC--GGCTAGAAAACCCCAGGCTGTCCAGGAAATCCCGG 9228378 Query 27595 GAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAC 27654 || || ||||| ||||||||||| || || || || ||||| |||| ||||| || Sbjct 9228379 GACCCATTGGCATCCCAGATCTTCACTCCTTTGGATGACAGCTCCTTGGCATTTGTAGAT 9228438 Query 27655 CCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTG 27714 || ||| |||||||||||||| |||| | ||||||| || || | |||||| || Sbjct 9228439 CCCTTGATAAACCACAGCAGCTCTTCCAGAATACCCTTCCAGAATACACGCTTGGTGGTC 9228498 Query 27715 AGGAGGGGAAA 27725 || |||||||| Sbjct 9228499 AGCAGGGGAAA 9228509 >seq107 Length=10030941 Score = 237 bits (262), Expect = 1e-57 Identities = 388/558 (70%), Gaps = 21/558 (4%) Strand=Plus/Minus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 |||||||| |||||| | || | ||||| |||||||| || || ||||||| || || Sbjct 3003366 AGCTGAGTTTTCAGCAGCTCAATGTGATTCAGGTAGATATGTGCATCTCCCAAAGTATGC 3003307 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 ||||| |||| |||| || || | || ||| ||||| || | |||| Sbjct 3003306 ACAAAGCCTCC--------------TGACATGCGCGACCAAGTAGGTGAGCAGCGCGTAG 3003261 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG--GTAGAGCTGAC 27307 ||| ||||||| ||||| || || || ||||| ||||| |||| ||| ||| |||| | Sbjct 3003260 CTGACGATGTTGAAGGGCACTCCCAGGCCCATATCCCCTGACCACTGTGGTACGGCTGGC 3003201 Query 27308 ACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCA 27367 | || ||||| |||| |||||||||| || | || |||||| ||||| ||||||| Sbjct 3003200 AGGACAGCTCCCCATTCACCACGTAAAACTAGCACAGGGTGTGGCAGGGAGGCAGAGCCA 3003141 Query 27368 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 27427 | || | ||||| |||| ||||| |||| |||||| | ||||| || |||||| Sbjct 3003140 TCAGAGGGAGATCTTTCAGGTTTCAGGCACACATGATGATCCTTCTGTCATCAGGGTTGG 3003081 Query 27428 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCC 27487 | ||||| || | |||| |||||||| || | || || ||||| ||| Sbjct 3003080 TTTTGATGGTGTTGATCACGTTCTGCAGCTGGTCATCTCCTTGACCTGAGTAATCTGAGT 3003021 Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 ||| | ||| || || | |||||||||||| ||||| || | || || ||||||| Sbjct 3003020 CCATACCTTCGTAGTCAGCCCTGAAATGCCTCCACTGGAAGCCACAGACGGGGCCCAGGT 3002961 Query 27548 CTCCCTCTTCCCTGTG-CTCGAAGCCCCTCT--TGTCCAAAAAGTCTCTGGAACCGTTGG 27604 | |||| ||| ||| || ||| ||| | |||| || || | ||| || |||| Sbjct 3002960 CCCCCT--TCCTGGTGGCTAGAAAACCCCAGGCTATCCAGGAAATCCCGGGACCCATTGG 3002903 Query 27605 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 27664 | ||||||||||| || || || || ||||| |||| |||| | || ||| | Sbjct 3002902 CATCCCAGATCTTCACTCCTTTGGATGACAGCTCCTTGGCATTTGCATATCCCTTGATAA 3002843 Query 27665 ACCACAGCAGCTCCTCCA 27682 |||||||||| ||||||| Sbjct 3002842 ACCACAGCAGTTCCTCCA 3002825 >seq109 Length=10228628 Score = 223 bits (246), Expect = 3e-53 Identities = 429/625 (69%), Gaps = 17/625 (3%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| || || || | || |||||||| |||||| | || ||||| |||| Sbjct 4836432 TGGGAAAGGC-CTTGGTTCTCGCTGAAGCTGAGTTTTCAGCTGCTCAGTGTGATTTAGGT 4836490 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTGACGTGA 27222 ||| | || |||| || || || ||||| || || || ||| |||| | |||||| Sbjct 4836491 AGATAGGTGCATCTCTCAAAGTATGCACAAAGTCACCTGGCTTCAGGCCCCGCGACGTGC 4836550 Query 27223 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 27282 || | || ||| ||||| | |||||||| || | | |||| || || || |||||| Sbjct 4836551 GCGA-CAAGTAGGTGAGCCCCGCGTAGCTGGTGAGGCTGCAGGGCACGCCCAGGCCCATG 4836609 Query 27283 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACAT 27342 ||||| |||| ||| || ||||| || || ||||| | || | || | | ||| Sbjct 4836610 TCCCCTGACCGCTGCTACAGCTGGCAGGACAGCTCCCTAT---TCACC-AGAGCTG---- 4836661 Query 27343 ATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 27402 || |||||| ||||| || |||| || | ||||| |||||||||| | ||| | Sbjct 4836662 --GGTGTGGCAGGGAGGCAGCGCCACCAGAGGGAGATCTTTCGGGTTCCAGGAGTACATG 4836719 Query 27403 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 27462 ||||| | || || || |||||| | ||| || | ||| |||||||| | Sbjct 4836720 ATGATCCTTCTATCATCAGGGTTGGTTTTGACAGCGTTGATCATGTTCTGCAGCTGGCCT 4836779 Query 27463 ACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAT 27522 || || |||| | | ||| |||||| |||| || || |||||||||||||| Sbjct 4836780 ACTCCTTGACCCGGGCAATCTGAGTCCATGTCTTTGTAGTCAGCCCCGAAATGCCTCCAG 4836839 Query 27523 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT--TGT 27580 |||| || || || || ||||||| ||||| | ||| || ||| ||| ||| Sbjct 4836840 GGGAAGCCATAGACGGGGCCCAGGTGCCCCTCCTGGCTG--CTAGAACACCCCAGGCTGT 4836897 Query 27581 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 27640 ||| || | | ||| ||| |||| ||||||||||| || || || || ||||||| Sbjct 4836898 CCAGGAAACCCCAGGACCCGCTGGCATCCCAGATCTTCACTCCTTTGGATGACAGCTCTT 4836957 Query 27641 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 27700 || || || || | ||| |||||||| |||| |||| ||| ||||||| || | Sbjct 4836958 TGACATTAGTAGATACCTTGATAAACCACAGTGGCTCGTCCAGGACACCCTTCCAGAACA 4837017 Query 27701 CCCTCTTGGTCGTGAGGAGGGGAAA 27725 | | |||||| || || |||||||| Sbjct 4837018 CACACTTGGTTGTCAGCAGGGGAAA 4837042 >seq82 Length=12555031 Score = 196 bits (216), Expect = 4e-45 Identities = 405/598 (68%), Gaps = 16/598 (3%) Strand=Plus/Plus Query 27132 CTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGAC 27191 ||| || |||||| | || | ||||| || ||||| || |||||| ||| || || || Sbjct 10556193 CTGGGTTTTCAGCAGCTCAATGTGATTCAAGTAGATATGTGCGTCTGCCAATGTATGCAC 10556252 Query 27192 AAACTCTCCCGG-TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGC 27250 || || || | ||| |||||| || ||| | | |||||| ||| || ||||| Sbjct 10556253 CAAGTCACCTGCCTTCAAGCCCGC-GATGTGCGTGACCATGTAGTGGAGCAGCCCGTAGC 10556311 Query 27251 TGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACG 27310 |||||||||| ||||| || || || |||| || | | |||| |||||| ||||| | | Sbjct 10556312 TGGCGATGTTGAAGGGCACACCCAGGCCCACGTTCTCTGACCGCTGGTATAGCTGGCTC- 10556370 Query 27311 AGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGA 27370 ||| || | ||||| ||||| || | ||||||||| ||||| || ||||| | Sbjct 10556371 ------CTCGTTCAC-CACGTAGAACTGGCACAGGGCGTGGCAGGGAGGCAGGGCCATCA 10556423 Query 27371 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 27430 | | ||| | ||||||||||| |||| |||||| | |||| || ||||| Sbjct 10556424 GAGGGAGATCTGTTGGGTTCCAGGCACACATGATGATACTTCTGTTGTCAGGGTTAACTT 10556483 Query 27431 TGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCA 27490 ||| | || | || || |||||||| | || || || |||| ||| || Sbjct 10556484 TGACGGTGTTGATCGCATTCTGCAGCTGGTTAACTCCTTGACCTAAGTAATCTGAGTCCA 10556543 Query 27491 TGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTC 27550 | || |||| || || | |||| || ||| ||||| | || || || ||||||| Sbjct 10556544 TATCTTTGTAGTCAGCACAAAAATACCACCACTGGAAGTCATAGACAGGGCCCAGGT--- 10556600 Query 27551 CCTCTTCCCTGTGCT---CGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 || || || ||| | || ||| ||| || || ||| || ||||| | Sbjct 10556601 CCCCTGCCTGGTGGTTAGAAAACCCCAGGCAGTCTGGGAAATCCTGGGACCCATTGGCAT 10556660 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667 |||||||||| || ||||| | |||||||||| || | || || ||| |||| Sbjct 10556661 CCCAGATCTTCACTCCCTTGGATGGCAGCTCTTTGGCACTTATAGATCCCTTGATAAACC 10556720 Query 27668 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 ||||||||||||||| || ||||||| || || | ||||| || || |||||||| Sbjct 10556721 ACAGCAGCTCCTCCAGGATACCCTTCCAGAACACACGTTTGGTTGTCAGCAGGGGAAA 10556778 >seq75 Length=11870250 Score = 138 bits (152), Expect = 8e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||||||| || | |||||| ||||| || | |||||||||||||| ||||| Sbjct 4085023 AGGCCCGTGACGTGCGCGACCATGTAGGTGAGCAGCGCATAGCTGGCGATGTTGAAGGGC 4084964 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||||||||| |||| |||||| ||||| || || ||||| |||| Sbjct 4084963 ACGCCCAGGCCCATGTCCCCTGACCGCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 4084904 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||||||||| ||||| || ||||| || Sbjct 4084903 ACGTAGAACTGGCACAGGGCGTGGCAGGGAGGCAGCGCCATCAG 4084860 Score = 86.0 bits (94), Expect = 5e-12 Identities = 122/170 (72%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || |||||||||||||| ||||| || || || || |||||||| Sbjct 4081483 CATATCTTTGTAATCAGCCCCGAAATGCCTCCACTGGAAGCCATAGACGGGGCCCAGGTC 4081424 Query 27549 TCCCTCTTCCCTGTGCTCG--AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCG 27606 || || | | ||| | || ||| |||||| || || | ||| || ||||| Sbjct 4081423 CCCTTCCTGGC--GGCTAGAAAACCCCAGGCTGTCCAGGAAATCCCGGGACCCATTGGCA 4081366 Query 27607 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||||||||||| || || || ||||| |||| ||||| || || Sbjct 4081365 TCCCAGATCTTTACTCCTTTGGATGACAGCTCCTTGGCATTTGTAGATCC 4081316 >seq3487 Length=3565 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27580 TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 27639 |||| || || | ||| || |||| ||||||||||| || || || ||| | |||| Sbjct 1451 TCCAGGAAATCCCGGGACCCACTGGCTTCCCAGATCTTCACTCCTTTGGAGGACAACTCT 1392 Query 27640 TTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 27699 |||| ||||| || || ||| ||||||||||||||||||| || ||||||| | Sbjct 1391 TTGGCATTTGTAGATCCCTTGATAAACCACAGCAGCTCCTCCAGAACACCCTTCCAGAGC 1332 Query 27700 ACCCTCTTGGTCGTGAGGAGGGGAAA 27725 || | || |||||| || |||||||| Sbjct 1331 ACACGCTAGGTCGTCAGCAGGGGAAA 1306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369475068462185