Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq188 159 5e-34 seq138 134 2e-26 seq137 123 4e-23 >seq188 Length=5414077 Score = 159 bits (176), Expect = 5e-34 Identities = 207/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || || || |||| || |||||||| | || | |||| |||| Sbjct 4139640 AAAGGACAGCCCTTCACATTTCTGCAGATCAGGGACTGAATGGAGGCTGTGTTGATGATC 4139581 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 | || ||||| ||||| || || || || || ||||||||| || ||||| || | Sbjct 4139580 TCAAAACCCACTTCTCCTCCAAAAGTACTTGGTTTCCAGTACTGTGGCGAGCATATAGGG 4139521 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || ||| ||| ||||| | |||||| || || |||| ||| | || ||||||| ||| Sbjct 4139520 TTACCCAGGAGTCCTTTCAAGGAGAATGGTGCTCCCATCTCTACCATCGTCTCACCAAAG 4139461 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | || || ||||||||||||| | | | |||||||||||||| || | | Sbjct 4139460 ATAGCATCTGGTCGAGGCTTTTCCACCAGAAGGGCAGGATACAGCTCCACAGCATCAATG 4139401 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || ||||| ||||| | ||| |||| || ||||| ||||||| Sbjct 4139400 TCACCGTACAGGGCTTCCAACTCGCCAGCCATTTCCTTCTCTCCTG 4139355 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||| | |||| ||| ||| || |||||||| || || || || || ||||| Sbjct 4137657 GTCTGGAATAAGCGCTCATCATCCCACTCCGGATGTTCCTGCTTAAGCACGTCACACACT 4137598 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| |||||||| ||||| |||||||| || || || || |||||||| Sbjct 4137597 CTGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATCAGACCGGGCACGAGGCCAAAG 4137538 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || || || | ||| | ||||| || | || || |||||||| | Sbjct 4137537 ACCTCCTGGCCCACCGCGAAGCGCGCATGCTCGGGGACATGGGCTGGGTAGATCATCTCT 4137478 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 || ||| ||||||| | ||| || ||||| || || ||||| |||| Sbjct 4137477 ACTTGGGTGTCTTTGGTGGTGGGAGGGTACATCTCCCCATCAATTATCT 4137429 Score = 109 bits (120), Expect = 8e-19 Identities = 184/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| || ||||| ||||| || | |||||||| || || | Sbjct 4138404 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCCACAAACTGGGTAAGTCCATGTTCC 4138345 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTA-GTCATACTTTGTTTTATCAATCTC 9062 | | ||| || |||||| ||| ||| || | | |||||||| | | |||||| | Sbjct 4138344 AATAATATAGAGTTGTTGAAGA-GAAATTGCTGAAAGTCATACTCTTGGTCATCAATTTG 4138286 Query 9063 AAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9122 || | || |||| || | |||||||||||| | | |||| |||||||| || || Sbjct 4138285 GAAGGTGTCGGGCAGAAGGGGATGCCAGTGATAGAGCGTGTTGAACTCGGACGCAATGCG 4138226 Query 9123 ATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATG 9182 || |||||||||||| | |||||||| || || | |||| ||||| || || Sbjct 4138225 GTTCTGGTACTGGAACTGCTGGCTGAAGAGCAGCTCTGGGTCAAACTTCAGCTTGAAGTG 4138166 Query 9183 GTAGCCGCTGAGCTGCTGAACGTA 9206 || ||||| | ||||| || || Sbjct 4138165 ATATCCGCTCAAGTGCTGCACATA 4138142 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| |||| ||| | ||||| ||||| ||||| ||||| | | ||| Sbjct 4136531 CTTACCCCATGGGCCAGGCCTGTGGTGAAAGCCGGTCCTCGTTTTTGATCAGACTTGAAA 4136472 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||| || |||||||| ||| | || || || ||||| | ||| ||||| || || || Sbjct 4136471 AACTGATGGGTGAAATGCTGGGCGAAGAAAGCGAACATCATGTTTGTGCCTTGCGGGTCA 4136412 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| |||| | |||||| |||||||| || Sbjct 4136411 GGGATGAACTTCCTTCTTAGAAGAACTTTTTCCAGAA 4136375 >seq138 Length=7537758 Score = 134 bits (148), Expect = 2e-26 Identities = 202/287 (70%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || || || |||| || |||||||| || | |||| |||| Sbjct 3102479 AAAGGACAACCCTTCACATTTCTGCAGATCAGGGACTGAATGAAAGCTGTGTTGATGATC 3102538 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 | || ||||| ||||| || | || || ||||||||||||| || ||||| || | Sbjct 3102539 TCAAAGCCCACTTCTCCTCCAGAAGTACTTGGCTTCCAGTACCGTGGCGAGCATATAGGG 3102598 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || | ||| ||| | | |||||| || || |||| ||| | || ||||||||||| Sbjct 3102599 TTAATCCGGAGTCCTGTCAAGGAGAAAGGTGCTCCCATCTCTACCATCGTCTCACCGAAG 3102658 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | || | ||||||||||||| | | |||||||||| ||| || | Sbjct 3102659 ATAGCATGTGGCCAAGGCTTTTCCACCAGAAGGGCAAGATACAGCTCCATAGCATCAGTG 3102718 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || ||||| ||||| | ||||||||| | ||||| ||||| || Sbjct 3102719 TCACCGTAGAGGGCTTCCAATTCGGCAGCCACTTCCTTCTCTCCAGT 3102765 >seq137 Length=7823544 Score = 123 bits (136), Expect = 4e-23 Identities = 197/283 (70%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||| |||| |||| |||||| || ||| | || || | ||||| || | Sbjct 7316261 GGACAGGTCTTGGAGTTGAGACAGACCAGCTTCTGCAGTGTGGCTGTGTTGACAATGTTG 7316202 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| || || || || ||||| |||||||||||| | || || |||||| ||| Sbjct 7316201 AAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAACAGATGGGATTC 7316142 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| ||| || |||||||| || || ||||||| ||||| || ||||| || |||||| Sbjct 7316141 CCCAGGAGCCCCTTGAGGGAAAAGGGGGCCCCCATCTCGATCATACTCTCTCCAAAGATG 7316082 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | ||| || || ||||| | | ||||| | ||| | ||| | || |||| |||| Sbjct 7316081 GAGTTCGGTAGGCATTTTTCAAGAAGCAATCCCGGGTAGAACTCTAAGGCATCGATGTCT 7316022 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | | | || || || |||||||| || |||| Sbjct 7316021 CCATATAACTCGTCTAACTCAGCTGCCATCTCCTTGTCCCCTG 7315979 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||| || |||||||| ||| || || Sbjct 7308364 TCACCTATGAGGATGAGGCGGGTGGTCTGGAAGAGCTGCTCGTCCTCCCAGGTGGGGTGC 7308305 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | ||||||| ||||| |||| | Sbjct 7308304 TCCGCCTTCAGCAGGTCACACACACGGTTGTGCTCACGCAGCCAGAGTGTGGCATACAGC 7308245 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 |||||||| || | ||| ||||| ||||||| || | ||||| Sbjct 7308244 ATGAGCCCCGGCAGCAGCCCAAACACCTCTTGGCCCATAGCCA 7308202 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 ||||||||||| |||| | || |||||| | || || || |||| | |||| ||| Sbjct 7306047 CTTACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGCCCCATCTTGCCAGA--AGTCTTAA 7305990 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| ||||| ||||| |||| ||||||||||| | ||| ||||| ||||| | Sbjct 7305989 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTCGTGCCTTGGGGGT 7305930 Query 9768 CGGGAGTGAAGGTCCTCC 9785 | || |||| |||||| Sbjct 7305929 CAGGGATGAATTTCCTCC 7305912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716812863550400