Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq168 96.9 5e-15 >seq168 Length=6074916 Score = 96.9 bits (106), Expect = 5e-15 Identities = 185/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 156179 GTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACCGTTAACTATTTTGAC 156238 ||| || || |||||||||||||| ||||| | | ||| || || || || | |||| Sbjct 4905798 GTTCGCCTCGGATTCACCCACATACTTGTTAAGGATTTCTGGTCCATTGACCACTTTGGG 4905739 Query 156239 GGGTCGTG-ATTTAAAAGCTTGAGCGATACAGCGAGCCATTAATGTTTTACCGCACCCAG 156297 || || ||| || | |||| | || ||||||| | || ||||| || |||| Sbjct 4905738 CTCTCTTGCATTCAACATCTTGC-CAATCTGTCGAGCCAAGAGGGTCTTACCACAACCAG 4905680 Query 156298 GAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAATTTTTCAGTTATTTCTA 156357 | | || ||||||| | ||||| | ||||||||| || | | || || ||| Sbjct 4905679 GGTGCCCATATAACAGGATGCCTTTCACATGTTTACATCCCATCTGCTCCACAATCTCTG 4905620 Query 156358 CCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGAAAATTCTTTATCCAATC 156417 |||| | |||||||||||||||| | | ||||| ||||||||| | |||| | Sbjct 4905619 GTGGAAATACTCTGGAAGCAAATGCTTGTTGGAAAATATCTGAAAATTCTCTGTCCAGCC 4905560 Query 156418 CCCCCACACCCATTTCCTCAAAATTCCAAT 156447 | || | ||||||| ||||| ||| ||| Sbjct 4905559 CTCCTATTCCCATTTTTTCAAAGTTCTAAT 4905530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667015705230600