Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq119 93.3 4e-14 >seq119 Length=1067461 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| || || || ||||||||||| |||||||||||||| |||||||| || || Sbjct 28425 ATGTACGTGTCAATCAGGAGGCTGTACATCTCGGAGTGTATGTTTTCCATGGCGATTTGG 28366 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 || ||||| || || |||||||| | || ||||| ||| Sbjct 28365 AAGCCGTAGAAACAGCGGGCTTCAGTGATCTGAACCTCC 28327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| || ||||| ||||| || || || || || | |||||||||| ||||||||||| Sbjct 31901 CCTCATCCCTGCTAATAAGCTCATTGGAGAACGTAAGCCCGGGCATCAGTCCTCGTTTCT 31842 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || |||| || || || ||||| ||||| || || || || | ||||| | Sbjct 31841 TGAGCCAGAAAATCGACGCAAAAGAACCAGAGAAGAAGATGCCTTCCACCGCAGCAAAGG 31782 Query 17106 C 17106 | Sbjct 31781 C 31781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517524632933880