Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq107 255 5e-63 >seq107 Length=1146635 Score = 255 bits (282), Expect = 5e-63 Identities = 510/752 (68%), Gaps = 3/752 (0%) Strand=Plus/Plus Query 18604 TGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAG 18663 || || ||||||||||||| | || || || ||||| || |||| || ||| |||| | Sbjct 528858 TGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTATTCTGGAAGGGTGTCTTGGAGG 528917 Query 18664 AGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATAC 18723 ||||| | ||||||||| || || || || | |||||||| | | || | | Sbjct 528918 AGTTGCTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAACTGTCTTCCAAGGGAGTGA 528977 Query 18724 ACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGAC 18783 | || |||||| | | ||| | | ||| | | || || ||| | |||| Sbjct 528978 AAATCTGGGATGCCAATGCATCCCGAGACTTTTTGGACAGACTGGGATTCTCCACCAGAC 529037 Query 18784 ACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATA 18843 | |||||||| || || |||| |||||||||||||| |||||||| || ||||| | Sbjct 529038 AAGAAGGGGACCTGGGTCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGTGCAGAATACA 529097 Query 18844 AAGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATA 18903 |||| | ||| | |||| | |||||| | || || ||||| | || || |||| Sbjct 529098 AAGATAAGGACTCAGATTATTCAGGTCAAGGAGTAGACCAACTGCAGAAAGTGATCGATA 529157 Query 18904 CAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATA 18963 | || ||||| ||||| || | || |||| || || | | || ||||| || || Sbjct 529158 CCATCAAAACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGAAATCCCAAAGACC 529217 Query 18964 TCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTG 19023 | || | |||| || || ||||| || | | || ||||| ||||| | || || | Sbjct 529218 TTCCTCTGATGGCGCTGCCCCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAATGGGG 529277 Query 19024 AATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACA 19083 | | |||||||| | ||||| || ||||| || ||| |||| || || || ||||||| Sbjct 529278 AGCTGTCCTGCCAGCTGTACCAAAGGTCGGGAGACATGAGCCTGGGCGTGCCCTTCAACA 529337 Query 19084 TTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAG 19143 | || | ||||| | || |||||||| | | |||||| || || || || | || | Sbjct 529338 TCGCCAGCTATGCCTTGCTCACCTACATGATCGTGCATGTCACCGGCCTGAAGCCAGGTG 529397 Query 19144 ATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAG 19203 |||| | ||||| |||| ||||| ||||||||| |||| || || || || | ||| Sbjct 529398 ATTTTGTACATACTTTGGGAGATGCCCATATTTACCTGAACCACATTGAGCCTCTGAAAA 529457 Query 19204 TGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAG 19263 ||||| ||| |||| |||||| || || |||| | ||||||| || || Sbjct 529458 CTCAGCTTCAGCGAGAACCAAGACCTTTCCCGAAGCTCAAAA-TCTTCGAAAAGT-TGAG 529515 Query 19264 A-TATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccc 19322 | || | || || ||| || ||||||||| | | || || || ||||| || | Sbjct 529516 ACGATTGATGATTTCAAAGCTGAAGATTTTCAGATGAAAGGGTACAACCCACATCCAACT 529575 Query 19323 cTAAAAATGGAAATGGCTCTTTAATGGATTTT 19354 | |||||||| |||||| |||| || |||| Sbjct 529576 ATTAAAATGGAGATGGCTGTTTAGTGTGTTTT 529607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399488219716845