Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq13 439 2e-118 seq7 408 3e-109 seq59 280 1e-70 seq107 253 1e-62 seq22 205 7e-48 seq1 188 5e-43 seq12 187 2e-42 seq17 149 5e-31 seq11 118 8e-22 >seq13 Length=143360832 Score = 439 bits (486), Expect = 2e-118 Identities = 441/570 (77%), Gaps = 2/570 (0%) Strand=Plus/Plus Query 3963 TTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTG 4022 || |||||||| ||||| ||||| ||||||||||||||||| || | |||||| || || Sbjct 59651484 TTCGTATTAATCGTTCTTTTCATAAACTTCAAATTTGTACTTGATGCCTTTCTCCTCCTG 59651543 Query 4023 CACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTC 4082 ||| |||||| || | ||| || ||| | |||||||||||||| | ||| | ||| Sbjct 59651544 GACACCAGAAAGGACGCCTGGGTACTCTGGGAGCAGTTTGTATTTCTCCAAATCGATTTC 59651603 Query 4083 TGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATC 4142 ||||||||| ||||||| |||||| || ||||||||| | |||||||||||| | |||| Sbjct 59651604 TGGAAAAAACGTGTCACTTTCAAATTCCTGCATGATCTT-GTCACAAACAGTCTGAGATG 59651662 Query 4143 GCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTC 4202 || ||| | | |||| ||||| ||||||||||| || ||||| | |||||| |||||||| Sbjct 59651663 GCCTGGCTGATTCATGGCTTCCTTATACACAGAGCTGCCTCCCACTATCCAAACCATGTC 59651722 Query 4203 TACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGC 4262 ||||||| ||| |||||||| | || |||||||||| |||||| | | ||||||||| Sbjct 59651723 CACTTTATCTGCCAATTCTGGTTCCTCAATAAGTTTTAAGGCATCAGCCAGACTCTTAGC 59651782 Query 4263 TAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCT 4322 | ||||| |||| ||||| | ||||| ||||| | |||||||| || || ||||| Sbjct 59651783 AAGGAAATGTGCTCCTTGTGGCGGTTCCTTGAGTTCTCTACTGAGAACTACGTTGATTCT 59651842 Query 4323 GCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCAC 4382 | | ||||||||||| |||||||| ||||| |||||||| ||||| | ||||||||||| Sbjct 59651843 GTCCTTTAAAGGCCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTCCCCATAATCAC 59651902 Query 4383 TAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATC 4442 | ||||||||| || || || || || | |||||||| ||||||| | || || Sbjct 59651903 CAGGTTCTGTTTACCTTCCACTGATGACGTTGGGGTCATTCTCTGGAAATACCTGAATTC 59651962 Query 4443 ATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTAC 4502 || | || ||||| |||| || || | ||||| |||||||||||||| | || Sbjct 59651963 -GTCCTGAGCGGGGGCCACGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTTTGTGACAC 59652021 Query 4503 AGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 ||| || |||||||| || | ||||||| Sbjct 59652022 AGCGACGATGCAGTTGAGCGGACGAACCAT 59652051 >seq7 Length=173684459 Score = 408 bits (452), Expect = 3e-109 Identities = 432/568 (76%), Gaps = 17/568 (3%) Strand=Plus/Plus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| ||||| ||||| ||||||||||||||||| || | |||||| || || ||| Sbjct 22061081 TATTAATCGTTCTTTTCATAAACTTCAAATTTGTACTTGATGCCTTTCTCCTCCTGGACA 22061140 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | |||||| || | | || ||| | |||||||||||||| | ||| | ||||||| Sbjct 22061141 TCAGAAAGGACGCCCAGGTACTCTGGGAGCAGTTTGTATTTCTCCAAATCGATTTCTGGA 22061200 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 ||||| ||||||| |||||| |||||||||||||| |||||||||||| | | || || | Sbjct 22061201 AAAAACGTGTCACTTTCAAATTCTTGCATGATCCTTGTCACAAACAGTCTGATATGGCCT 22061260 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | | | || ||||| ||||||||||| || ||||| | |||||| |||||||| ||| Sbjct 22061261 GGCTGATTGATGGCTTCCTTATACACAGAGCTGCCTCCCACTATCCAAACCATGTCCACT 22061320 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 |||| ||| |||||||| | || ||||||||||| |||||| | | ||||||||| | Sbjct 22061321 TTATCTGCCAATTCTGGTTCCTCAGTAAGTTTTAAGGCATCAGCCAGACTCTTAGCAAGG 22061380 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 ||||| |||| ||||| | ||| | | ||| | |||||||| | || |||||| | Sbjct 22061381 AAATGCGCTCCTTGTGGCGGGTCCATGAATTCTCTACTGAGAACTATGTTGATTCTGTCC 22061440 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 ||||||||||| |||||||| ||| |||| | | ||||||||||| | Sbjct 22061441 TTTAAAGGCCGATTCTTCTCTGGA----AGAA---------TCTCCCCATAATCACCAGG 22061487 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 ||||||||| || || || || | || |||||||| ||||||| | | || |||||| Sbjct 22061488 TTCTGTTTACCTTCCACTGACGACATTGTGGTCATTCTCTGGAAATATCTGAATTCATTC 22061547 Query 4447 ATAAGTCTTGGCCAAGGCAAGTTACCTTGT--TTGCCAATGCCCATGTTTTGAGCTACAG 4504 | || ||||| |||| || || ||| ||||||||||||||||| || | |||| Sbjct 22061548 CTGAGCGGGGGCCACGGCAGGT--CCCTGTTCTTGCCAATGCCCATGTTCTGGGACACAG 22061605 Query 4505 CAACAATGCAGTTTAGTGCTTGAACCAT 4532 |||| |||||||| |||| ||||||| Sbjct 22061606 CAACGATGCAGTTGAGTGGAAGAACCAT 22061633 >seq59 Length=2586821 Score = 280 bits (310), Expect = 1e-70 Identities = 364/499 (73%), Gaps = 13/499 (3%) Strand=Plus/Minus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||| | |||||| | ||||||| ||| |||||||||| || | ||| || || | | Sbjct 259281 TATTACTTATTCTTTTTATATACTCCAAGCTTGTACTTAACACCCTACTCCTCCTGGAAA 259222 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | || || || ||||| || ||| | |||||| |||||||| | ||||| || ||| Sbjct 259221 TCAGGCAGGACTCTTGGGTACTCTGGGAGAAGTTTATATTTCTCCAAATCAATTT--GGA 259164 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 ||||||||||||| |||||| ||| || ||||||| |||||||| ||| ||||| | | Sbjct 259163 AAAAAGGTGTCACTTTCAAATTCTGGCGTGATCCTTGTCACAAATAGTCTAAGACGACCT 259104 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | | |||| | || |||| ||||| || ||||| |||||| | |||||||| Sbjct 259103 GGCTTATTCATGGAGTCCATATAAACAGAGCTGCCTCCCTCTATCCAAGGCGTGTCTACT 259044 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 | |||| ||||||||| | | | ||||||||| ||||||| | |||||| || | | Sbjct 259043 TCATTTCTTAATTCTGGTTCCTTAGAAAGTTTTAAGGCATCATGCAGACTCTTGGCAAGA 258984 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 ||| | |||| |||||| | |||| ||||| | |||||||||||| |||| Sbjct 258983 AAAGGTGCTCCCTGTGGAGGTTCCTGGTGTTCCCTATGGAGAACAACATTGATTC----- 258929 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 |||| ||| | || ||||||||||| |||| ||| ||||| || |||||||| | | | Sbjct 258928 TTTAGAGGTTGATTGTTCTCAGGAATGGAGAGCCAGGTCTTCCTA-CCATAATCTCCAGA 258870 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 ||| ||| | || || ||| | | || |||| |||||||||| |||| ||| || Sbjct 258869 TTC-GTTCACCTTCCACTGAAAAGCTTGTGGTCACTCTTTGGAAA----TAAATTCAGTC 258815 Query 4447 ATAAGTCTTGGCCAAGGCA 4465 ||| |||||||||| Sbjct 258814 TCAAGCAGGGGCCAAGGCA 258796 >seq107 Length=1146635 Score = 253 bits (280), Expect = 1e-62 Identities = 505/739 (68%), Gaps = 7/739 (1%) Strand=Plus/Minus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTC 101592 ||||||||||| | ||||||||| | || |||||||| || || | || | || || Sbjct 529598 TAAACAGCCATCTCCATTTTAATAGTTGGATGTGGGTTGTACCCTT-TCATCTGAAAATC 529540 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 || ||||| || |||||||| ||| |||| | | | | || | || || || Sbjct 529539 TTCAGCTTTGAAATCATCAATCGTCTCAACTTTTCGAAGATTT-TGAGCTTCGGGAAAGG 529481 Query 101653 TCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGC 101712 ||| || |||| | ||| |||| |||| |||||||| | | || || || || Sbjct 529480 TCTTGGTTCTCGCTGAAGCTGAGTTTTCAGAGGCTCAATGTGGTTCAGGTAAATATGGGC 529421 Query 101713 ATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCA 101772 |||||| | |||||| | ||| || || ||| || |||||||| | |||||| | Sbjct 529420 ATCTCCCAAAGTATGTACAAAATCACCTGGCTTCAGGCCGGTGACATGCACGATCATGTA 529361 Query 101773 AGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCT 101832 || | | | |||||| || ||||| || ||||| || | | ||| || | || || Sbjct 529360 GGTGAGCAAGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCTCATGTCTCCCGACCT 529301 Query 101833 TTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAATACATGAC 101891 ||| ||||| || ||||| |||| |||| ||| || || || || | | |||| | Sbjct 529300 TTGGTACAGCTGGCAGGACAGCTCCCCATTCACC-ACGTAGAACTGGCAGAGGGCATGGC 529242 Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951 | || |||| | |||| ||||| |||| ||| || |||||||| | || |||| Sbjct 529241 ATGGGGGCAGCGCCATCAGAGGAAGGTCTTTGGGATTTCAGGCACACATGATGATTCTTC 529182 Query 101952 TATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTC 102011 | || |||||| ||||| || ||||| |||| | | | |||||| ||||||| | Sbjct 529181 TGTCATCAGGGTTGGTTTTGATGGTATCGATCACTTTCTGCAGTTGGTCTACTCCTTGAC 529122 Query 102012 CTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCA 102070 || |||||| | | || | |||| |||||||| || |||||||||||||| || ||| Sbjct 529121 CTGAATAATCTGAGTCCTT-ATCTTTGTATTCTGCACCAAAATGCCTCCACTGGAAGCCA 529063 Query 102071 TACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGAT 102130 || || || || || || ||||| | |||| | || || ||| | || ||||| | Sbjct 529062 TAAACTGGACCCAGGTCCCCTTCTTGTCTGGTGGAGAATCCCAGTCTGTCCAAAAAGTCT 529003 Query 102131 CTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTA 102190 | ||| |||| |||||||| || | ||| || | || || ||||| | || Sbjct 529002 CGGGATGCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGCATTTGTG 528943 Query 102191 GATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTA 102250 ||||| |||||||||||| || || || | ||||| |||| ||||| | || || Sbjct 528942 GATCCCTTGATAAACCACAGCAACTCCTCCAAGACACCCTTCCAGAATACACGTTTGGTT 528883 Query 102251 GTTAAAAGTGGAAATTCAT 102269 || | || |||||||||| Sbjct 528882 GTCAGCAGAGGAAATTCAT 528864 >seq22 Length=111700775 Score = 205 bits (226), Expect = 7e-48 Identities = 179/223 (80%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 3956 AAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCT 4015 |||| | || |||||||| ||||| ||||| ||||||||||||||||| || | ||||| Sbjct 37501554 AAAGGCTTTCGTATTAATCGTTCTTTTCATAAACTTCAAATTTGTACTTGATGCCTTTCT 37501613 Query 4016 CTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGAT 4075 | || || ||| |||||| || | ||| || ||| | |||||||||||||| | || Sbjct 37501614 CCTCCTGGACACCAGAAAGGACGCCTGGGTACTCTGGGAGCAGTTTGTATTTCTCCAAAT 37501673 Query 4076 CAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTT 4135 ||| |||||||||||| ||||||| |||||| || ||||||||||| |||||||||||| Sbjct 37501674 CAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCATGATCCTTGTCACAAACAGTC 37501733 Query 4136 TAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACT 4178 | |||| || ||| | |||| ||||| ||||||||||| || Sbjct 37501734 TGAGATGGCCTGGCCGATTCATGGCTTCCTTATACACAGAGCT 37501776 >seq1 Length=194850757 Score = 188 bits (208), Expect = 5e-43 Identities = 321/465 (69%), Gaps = 44/465 (9%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||| | |||||| ||||| ||||||| |||| |||| || |||| || || | || Sbjct 20083834 ATTAGTCATTCTTTTCATAGACTTCAAGTTTGCACTTGATGCTTTC----TCCTGGAAAT 20083889 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||||| || ||||| || ||| | |||||||||||| | ||||| | ||||| Sbjct 20083890 CAGAAAGGACTCTTGGGTACTCTGGGA---GTTTGTATTTCTTCAAATCAA--TGTGGAA 20083944 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 ||||| |||| |||||| ||| ||| ||| || |||||| || |||||| || || Sbjct 20083945 AAAAGCCATCACTTTCAAATTCTGGCACGATTCTTGTCACA----GTCTAAGATGGCCTG 20084000 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | ||| |||||| | || ||| | || ||||| ||||| | ||||||||| Sbjct 20084001 GCTGATTCACAGCTTCCGTCTAAACAAAGCTGCCTCCCTCCATCCAAAATGTGTCTACTT 20084060 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267 ||| |||| ||||||| | ||||| || |||||||| | |||| | || | || Sbjct 20084061 TAT---CTAAGTCTGGCT----CCTTAGTTTAAAGGCATCATCCAGACTCCTGGCGAGAA 20084113 Query 4268 AATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTT 4327 || |||| ||| | |||||||| ||||| |||||||| | Sbjct 20084114 AAGGAGC----------------------TCCCTACTGAGAACGACATTGATTCTGCCCT 20084151 Query 4328 TTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAAT 4387 ||||||| | ||||||||||||| |||| ||| ||||| | ||||| | | | || Sbjct 20084152 TTAAAGGTTGATTCTTCTCAGGAACGGAGAGCCAGGTCTTCCTGTGCATAA-CCCCAGAT 20084210 Query 4388 TCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAAT 4432 || ||| | || | | || || | || ||||||||||||||| Sbjct 20084211 TCCGTTCACCTTGCCCGGAGGA-GCTGTGCTCATTCTTTGGAAAT 20084254 >seq12 Length=155355395 Score = 187 bits (206), Expect = 2e-42 Identities = 172/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26955 ATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTA 27014 ||||| || || || ||||| ||||||| ||| ||||||||||| |||| ||||| | Sbjct 41696083 ATGGGGGTTACACAGGTGCATCCTACAGCCACCAGCATCTTCTCCAGCCGGAATGAGTGT 41696024 Query 27015 GGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTTC 27074 |||||| | || | | |||| | || || |||||||| ||||| ||||| |||||| Sbjct 41696023 GGGCAGTGCTGGGACTCCCTGCGTAGGACCAGGATCTCTTGCTGGATTGGGACAGAGTTC 41695964 Query 27075 ATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTCC 27134 ||||||| ||| ||||||| |||||||| ||||| || |||| ||| ||||| || ||| Sbjct 41695963 ATGTGGTGGTCCTCATTCCCTTCAGCATTGACACAGCCCAAGTGGCGGCACTTGGCCTCC 41695904 Query 27135 CAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||||||||||||||||| || |||| || ||||| Sbjct 41695903 CAGATCACAGAGGGATATCTCTCACGATCCTCGTTGCG 41695866 >seq17 Length=85008467 Score = 149 bits (164), Expect = 5e-31 Identities = 343/518 (66%), Gaps = 28/518 (5%) Strand=Plus/Minus Query 4020 TTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAA 4079 ||| | || ||||||||||| ||| |||||| | |||||| |||||||| | ||||| Sbjct 68012089 TTGGATATCAGAAAGAACACCTGGGTATTCTGGGATAAGTTTATATTTCTCCAAATCAAT 68012030 Query 4080 TTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAG 4139 |||| ||||| || |||| |||||| || ||||||| | |||| ||||| || || Sbjct 68012029 TTCTCAGAAAAAAGTTTCACTTTCAAATTCCCACATGATCTTTGTCATAAACACATTGAG 68011970 Query 4140 ATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCAT 4199 || || ||| | | | | ||||| |||| | ||||||||| | | ||| || | Sbjct 68011969 ATGGCCTGGTTGATTTAAGGCTTCCTTATCAATAGAACTACC-CTCACAATCTGAACTGT 68011911 Query 4200 GTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTT 4259 ||||||||||||| ||||||||| || | | || | ||||||| | ||||| Sbjct 68011910 GTCTACTTTATTTATTAATTCTGG----TCCCTTCATATTCAGGCATCATTCATACTCT- 68011856 Query 4260 AGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAAT 4319 ||| ||| ||||| ||||| | ||| ||| | | | Sbjct 68011855 ----------TGA----------CAAGTTCCTTGAGTTCACTACTGGGAATTGCGATGGT 68011816 Query 4320 TCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAAT 4379 || ||||||||||||| |||||| | ||| ||||||||| | || ||| || ||| Sbjct 68011815 ATTGTCTTTTAAAGGCCGATTCTTCCTGGAAATGGAGAACCAAATGTTCCTACTCACAAT 68011756 Query 4380 CACTA--AATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTA 4437 ||| | || | ||||||| ||||| | ||||||||| || ||| | || Sbjct 68011755 CACCAGGTTTTTTTTTTATCTTCAGTCGAAGAGATTGTAGTCATTTTTCAGAAGTACTTG 68011696 Query 4438 AAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGA 4497 || |||||| | | | || | |||||| | | |||| |||| ||||||| || Sbjct 68011695 AACTCATTCTTGATTGGGGGTAAGAGCAAGTCCCTATTCTTGCAAATGTCCATGTTCTGT 68011636 Query 4498 GCTACAGCAACAATGCAGTTTAGTGCTTGAACCATAAT 4535 | ||||||| ||| | || | |||||||| || Sbjct 68011635 GACACAGCAATGATGTACTTCAACCGATGAACCATGAT 68011598 >seq11 Length=87554214 Score = 118 bits (130), Expect = 8e-22 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||||||||| || ||||| | ||||||||||||||| ||||||| ||| |||||||| Sbjct 1178981 TTATACACAGAGCTGCCTCCCACTATCCAGACCATGTCCACTTTATCTGCCAATTCTGGT 1179040 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | || |||||||||| |||||| | | ||||||||| | ||||| |||| ||||| Sbjct 1179041 TCCTCAATAAGTTTTAAGGCATCAGCCAGACTCTTAGCAAGGAAATGTGCTCCTTGTGGC 1179100 Query 4285 AGCTCCTTTAGTT 4297 | ||| | |||| Sbjct 1179101 GGTTCCCTGAGTT 1179113 Score = 116 bits (128), Expect = 3e-21 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 4057 AGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATG 4116 |||||||||||||| | ||| | |||||||||||| ||||||| |||||| || |||||| Sbjct 1178223 AGTTTGTATTTCTCCAAATCGATTTCTGGAAAAAACGTGTCACTTTCAAATTCCTGCATG 1178282 Query 4117 ATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTC 4163 ||||| |||||||||||| | |||| || ||| | | |||| ||||| Sbjct 1178283 ATCCTTGTCACAAACAGTCTGAGATGGCCTGGCTGATTCATGGCTTC 1178329 Score = 102 bits (112), Expect = 6e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | || |||||| | ||||||||||| |||||||| || Sbjct 1185576 CTTGAGTTCTCTACTGAGAACTATGTTGATTCTGTCCTTTAAAGGCCGATTCTTCTCTGG 1185635 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| | ||||||||||| | ||||||||| || Sbjct 1185636 AATGGAGAACCAGGTCTTCCTCCCCATAATCACCAGGTTCTGTTTACCT 1185684 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 3963 TTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTG 4022 ||||||||||| ||||| ||||| ||||||||||||||||| || | |||||| || || Sbjct 1176566 TTTGTATTAATCGTTCTTTTCATAAACTTCAAATTTGTACTTGATGCCTTTCTCCTCCTG 1176625 Query 4023 CACATTAGAAAGAACACTTGGATA 4046 |||| |||||| || | ||| || Sbjct 1176626 GACATCAGAAAGGACGCCTGGGTA 1176649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361236930690491