Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15 114 2e-20 seq1 114 2e-20 seq3 93.3 5e-14 seq119 82.4 9e-11 >seq15 Length=109054052 Score = 114 bits (126), Expect = 2e-20 Identities = 240/355 (68%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 21884 CCGGTTGATCCAAACCCTTGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTTC 21943 || || || ||||| ||| | ||||| || || ||| | | ||| ||||||| Sbjct 46625698 CCAGTAGAACCAAAACCTCCTGCACCTCTTTCAGTGTCATCCAAAACTTGAACTTCTTCT 46625639 Query 21944 AGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTTACA 22003 | |||||||||| | || |||| | | || ||||| || ||||| || ||| | || || Sbjct 46625638 ATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTCACCCTTTTTGACT 46625579 Query 22004 TTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCTTCG 22063 | ||| | | ||| ||| ||||| | | || || | |||||| ||||||||||| Sbjct 46625578 TCAAACTTTTCTTTGCCAAAATTAAACAATACAACACCAACATTTCCTCTATAATCTTCA 46625519 Query 22064 TCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGAGCT 22120 ||||| ||||| |||| | ||| || | |||| | || ||||| | |||||| Sbjct 46625518 TCTATAACACCAGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCCAGAACGTGGAGCT 46625459 Query 22121 ATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAATTGTCTT 22180 ||||| |||||||| ||| | | || ||| || || || | | || ||| Sbjct 46625458 ATTCTTCCATAGCATCCAGAAGGAAGAGCTATCTGAATGTCCGTTTTCA--CAATGGCTT 46625401 Query 22181 TCTCC--TGGAGGGATAGTATAATCATAAGCGCTATATAAATCATATCCGGCGGC 22233 ||||| || || | |||||||||||||| || || | || || || ||||| Sbjct 46625400 TCTCCATAGGTGGTACGGTATAATCATAAGCACTGTACAGGTCGTAGCCCGCGGC 46625346 >seq1 Length=194850757 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| |||||||||||||| | || ||||| |||| | Sbjct 145038472 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 145038413 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || |||||||| ||||| || | ||| |||||| | | ||||| ||||||| Sbjct 145038412 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCA 145038353 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177 || |||| ||| || | | ||||||| || Sbjct 145038352 AGGCTCCAGGTAAATAGCAAATGCTCCAGGACG 145038320 Score = 109 bits (120), Expect = 7e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 145027300 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTCGAGACAGCAATCCTTGCCGCCAGGA 145027241 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || ||||| | ||||| | || || ||| |||| || | || ||| |||| Sbjct 145027240 TGGCATAGTCGGGATGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCCA 145027181 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 54935 ||| || || || |||||| | |||| |||||||| || ||||||| Sbjct 145027180 GTTCCACTGTGGTGACTCCACTGTATAAGCCTTGGATTACTTTCATAG 145027133 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| || || ||||| ||||| || || || || || |||||||| | Sbjct 145049076 ACCTGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTAGTGTACGGTTCAATG 145049017 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || |||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 145049016 GATTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTTGGCATCGGGGCAAGAAGTAAA 145048957 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 145048956 CTGTTTCTTATACCATA 145048940 >seq3 Length=155691105 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 ||||||||||| || ||||| ||||||||||||||||| || || ||||| |||||| Sbjct 117747334 AAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAAA 117747393 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 24627 ||||| || |||| ||| ||| | ||||| | | || ||| || |||| Sbjct 117747394 TATTTCTCATCTGATGTAAGTCTGTTCCAGTGAGGGAGATCCTTTGATA 117747442 >seq119 Length=1067461 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||||| || || ||||| || || || |||||||| ||||| Sbjct 28432 ATCTTTAATGTACGTGTCAATCAGGAGGCTGTACATCTCGGAGTGTATGTTTTCCATGGC 28373 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 ||||| || ||||||||||| | || || || ||||| || || Sbjct 28372 GATTTGGAAGCCGTAGAAACAGCGGGCTTCAGTGATCTGAACCTC 28328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593697546853680