Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq19 86.0 5e-12 seq13 86.0 5e-12 seq7 86.0 5e-12 >seq19 Length=57279966 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||||| |||||||| |||||||| ||||| ||||||||| Sbjct 43334431 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 43334490 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| | ||| | | || ||||| ||||| ||||| | |||||||||| | ||||| Sbjct 43334491 GATGGACAGACTTTATCTGACTACAACATTCAAAAGGAGT-TACTCTTCACCTTGTGTT 43334548 >seq13 Length=143360832 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||||| | ||||| ||||| | || ||||| |||||||| || ||||| Sbjct 88038957 AAGCAAAAA-TCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATTTTTGCT 88039015 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 ||||| |||||||||||| ||| | | || ||||| ||||| ||||| |||||| Sbjct 88039016 GGCAAGCAACTGGAAGATGGACGGACTTTATCTGACTACAACATTCAAAAGGAGTCTACT 88039075 Query 29160 CTTCACATGGTGTTACGATTACGAGGAGG 29188 | |||| | ||||| |||| || || || Sbjct 88039076 CCTCACCTTGTGTTGAGATTTCGTGGGGG 88039104 >seq7 Length=173684459 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| | ||||| || ||||| || ||| |||||| | Sbjct 2561318 ATGCAGATCTTCGTGAAAACCCTTACGGG-AAGACCATCACGCTCGAGGTTGAACCCTCG 2561260 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| ||||| ||||| | || ||||| Sbjct 2561259 GATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 2561200 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| || ||||| ||||| |||||||||||| ||| | | || ||||| Sbjct 2561199 CAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGATGGACTTTATCTGACTACAAC 2561140 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||| ||||| |||||||||||| | ||||| Sbjct 2561139 ATTCAAAAGGAGTCTACTCTTCACCTTGTGTT 2561108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428319080861855