Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq107 266 4e-66 seq9 226 3e-54 seq16 152 6e-32 >seq107 Length=1146635 Score = 266 bits (294), Expect = 4e-66 Identities = 546/804 (68%), Gaps = 7/804 (1%) Strand=Plus/Minus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || || ||||||||||| || | | || |||| ||| || | || | ||| || Sbjct 529598 TAAACAGCCATCTCCATTTTAATAGTTGGATGTGGGTTGTACCCTTTCATCTGAAAATCT 529539 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCT-GGGAAAGGG 145655 || || |||| ||||| || ||| || | || || ||||| | |||||||| Sbjct 529538 TCAGCTTTGAAATCATCAATCGTCTCAACTTTTCGAAG-ATTTTGAGCTTCGGGAAAGGT 529480 Query 145656 CCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCG 145714 | || ||| ||| ||||| ||||| ||||| | |||||| ||||| | || | Sbjct 529479 CTTGGTTCTCGCTGA--AGCTGAGTTTTCAGAGGCTCAATGTGGTTCAGGTAAATATGGG 529422 Query 145715 CGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGT 145774 | || |||| || | || || || |||| ||||| |||| || ||| ||||| Sbjct 529421 CATCTCCCAAAGTATGTACAAAATCACCTGGCTTCAGGCCGGTGACATGCACGATCATGT 529362 Query 145775 AGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGC 145834 |||| |||| || |||||||| |||||||||||||| ||||| | |||||| ||||| | Sbjct 529361 AGGTGAGCAAGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCTCATGTCTCCCGACC 529302 Query 145835 GCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGC 145894 ||||||||||||||||| |||||||| | |||||||||||||||| ||| |||| Sbjct 529301 TTTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCATGGC 529242 Query 145895 AGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCC 145954 | || ||||| ||||| || ||||| || || ||||| | || || || | Sbjct 529241 ATGGGGGCAGCGCCATCAGAGGAAGGTCTTTGGGATTTCAGGCACACATGATGATTCTTC 529182 Query 145955 TGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCC 146014 || || ||||| | ||||| | |||| | | || ||||| || || || | Sbjct 529181 TGTCATCAGGGTTGGTTTTGATGGTATCGATCACTTTCTGCAGTTGGTCTACTCCTTGAC 529122 Query 146015 CCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGT 146074 | ||||||| | || ||| | || || || |||||||||||||| || | Sbjct 529121 CTGAATAATCTGAGTCCTTATCTTTGTATTCTGCACCAAAATGCCTCCACTGGAAGCCAT 529062 Query 146075 AGACGGGCCCCAGGTCCCCGGGCTCCCT-GTGCCCCAGCCCGGCCCGGGCGAGGAAGTCC 146133 | || || ||||||||||| | || ||| | ||| | | | | | ||||| Sbjct 529061 AAACTGGACCCAGGTCCCCTTCTTGTCTGGTGGAGAATCCCAG-TCTGTCCAAAAAGTCT 529003 Query 146134 CGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTG 146193 ||||| | ||||| |||||||| || || ||| | | || || || || | | ||| Sbjct 529002 CGGGATGCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGCATTTGTG 528943 Query 146194 GACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTG 146253 || ||| |||| ||||| |||| ||| || | ||| ||| ||||||| || | ||||| Sbjct 528942 GATCCCTTGATAAACCACAGCAACTCCTCCAAGACACCCTTCCAGAATACACGTTTGGTT 528883 Query 146254 GTCAGCAGGGGGAACTGGCCCCGCAGGGAGTACTTGGCCTGGTCCCCGAAGACGGACAGG 146313 |||||||| || || | | | |||| ||| |||| ||||| || |||||| Sbjct 528882 GTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCACACCTGCATGCCGAACACCGACAGG 528823 Query 146314 GTGCCCACGCCCGTCCTGTCCCCC 146337 ||||| |||||| | |||| || Sbjct 528822 GTGCCGGTGCCCGTGCGGTCCTCC 528799 >seq9 Length=116251907 Score = 226 bits (250), Expect = 3e-54 Identities = 544/801 (68%), Gaps = 29/801 (4%) Strand=Plus/Plus Query 9568 AACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA-TTTCTTTTAACTTTGCCATT 9626 ||||| | ||||| |||||| | || || |||||||| ||||| || || | ||||| Sbjct 14491441 AACATCTACCTGTTCAACTTGACGATTTCGGACTTGCTCCTTTCTCTTCACCT--CCATT 14491498 Query 9627 TTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACT 9686 ||||| ||||| || | || | | || ||| |||| | | | |||| || || Sbjct 14491499 CTGGATTCACTACGTTAGG-TGGAAC--GAGTGGGTGTTTGACAGTCACATGTGCAAGCT 14491555 Query 9687 GCTCAG-GGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAA 9745 ||| ||| ||| | | || |||||||| || |||| | |||||||||||| | Sbjct 14491556 CCTCTCCGGGACTGTATGCCCTGGGCATGTACAGCGAGATCTTCTTCATCATCCTGCTGA 14491615 Query 9746 CAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGT 9803 | | |||||||| || || | ||| | || || ||| || ||| | ||||| Sbjct 14491616 CGATGGACAGGTACCTGGCCATCGTCCACGCCGTGTTTGCCCTTCGAGCCC--GGACAGT 14491673 Query 9804 AACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCC 9862 |||| |||| | | ||| | | ||| |||||| || |||||| || | |||||| Sbjct 14491674 CACCTTTGGCGTCATCACCAGCAT-TGTCACCTGGGCCCTTGCAGGGCTGGCGGCCCTCC 14491732 Query 9863 CTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGAT--CCTTA 9920 | || ||| |||| |||| |||| || | ||| | ||||| || Sbjct 14491733 CCGAGTTTATCTTCCATGAGTTCCAAAGGGAGCCCG--AGGAGGCTGTGTGCAGCCCCGT 14491790 Query 9921 CTACCCAGAG-ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGT 9979 ||||||||| ||| | | | | ||| ||| ||||| | | ||| ||| Sbjct 14491791 GTACCCAGAGGATGAGGAAGACAGCT-GGAAGCGTTTCCACGCCCTGAGGATGAATATCC 14491849 Query 9980 TAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGAC 10039 | | ||| | ||||||||||||| ||| | |||||||| | ||| |||| || | Sbjct 14491850 TGGGCCTCGCTCTGCCTCTGCTCATCATGACCATCTGCTACACCGGAATCATCAAAACGC 14491909 Query 10040 TGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGG 10099 || | ||| |||||| ||| | |||||||| |||||| ||||||| ||||||||||||| Sbjct 14491910 TGCTCAGGTGCCCCAACAAAACAAAGTACAAAGCCATCCGGCTCATTTTTGTCATCATGG 14491969 Query 10100 TGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACG 10159 ||| || ||| |||| ||| |||| |||||| | ||||| | || ||| | ||||| | Sbjct 14491970 TGGTCTTTTTCATTTTCTGGGCACCTTACAACCTGGTTCTTTTTCTTTCTGCTTTTCAAG 14492029 Query 10160 CAACCCTTCTTAACCTGCAG-TGTGCATTGAGCAGTA---ACTTGGACATGGCTCTGCTG 10215 | | |||| | |||| |||| |||||| | | |||||| |||| || | Sbjct 14492030 CGA-TCTTCCTGGAGAGCAGCTGTG---AGAGCAGCAAGCAGTTGGACCTGGCCAGGCAG 14492085 Query 10216 ATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTG 10275 | ||| | | || |||| ||||| ||| ||||||| | ||||| || ||||| Sbjct 14492086 GTGACAGAGGTGATCACCCACACCCACTGCTGCGTCAACCCCATCATCTATGCCTTCGTA 14492145 Query 10276 GGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCT 10334 || ||||| || ||||| ||||| ||||||| |||||| | |||||||||||||| Sbjct 14492146 GGCGAGAAATTCCAGAAG-TACCTGCACCACTTTTTCCACCGGCATGTGGCCATCTACCT 14492204 Query 10335 CTGCAAGTACATCCCCTTCCT 10355 |||| |||||||| ||||| Sbjct 14492205 GGGCAAATACATCCCGTTCCT 14492225 Score = 226 bits (250), Expect = 3e-54 Identities = 544/801 (68%), Gaps = 29/801 (4%) Strand=Plus/Plus Query 176454 AACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA-TTTCTTTTAACTTTGCCATT 176512 ||||| | ||||| |||||| | || || |||||||| ||||| || || | ||||| Sbjct 14491441 AACATCTACCTGTTCAACTTGACGATTTCGGACTTGCTCCTTTCTCTTCACCT--CCATT 14491498 Query 176513 TTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACT 176572 ||||| ||||| || | || | | || ||| |||| | | | |||| || || Sbjct 14491499 CTGGATTCACTACGTTAGG-TGGAAC--GAGTGGGTGTTTGACAGTCACATGTGCAAGCT 14491555 Query 176573 GCTCAG-GGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAA 176631 ||| ||| ||| | | || |||||||| || |||| | |||||||||||| | Sbjct 14491556 CCTCTCCGGGACTGTATGCCCTGGGCATGTACAGCGAGATCTTCTTCATCATCCTGCTGA 14491615 Query 176632 CAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGT 176689 | | |||||||| || || | ||| | || || ||| || ||| | ||||| Sbjct 14491616 CGATGGACAGGTACCTGGCCATCGTCCACGCCGTGTTTGCCCTTCGAGCCC--GGACAGT 14491673 Query 176690 AACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCC 176748 |||| |||| | | ||| | | ||| |||||| || |||||| || | |||||| Sbjct 14491674 CACCTTTGGCGTCATCACCAGCAT-TGTCACCTGGGCCCTTGCAGGGCTGGCGGCCCTCC 14491732 Query 176749 CTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGAT--CCTTA 176806 | || ||| |||| |||| |||| || | ||| | ||||| || Sbjct 14491733 CCGAGTTTATCTTCCATGAGTTCCAAAGGGAGCCCG--AGGAGGCTGTGTGCAGCCCCGT 14491790 Query 176807 CTACCCAGAG-ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGT 176865 ||||||||| ||| | | | | ||| ||| ||||| | | ||| ||| Sbjct 14491791 GTACCCAGAGGATGAGGAAGACAGCT-GGAAGCGTTTCCACGCCCTGAGGATGAATATCC 14491849 Query 176866 TAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGAC 176925 | | ||| | ||||||||||||| ||| | |||||||| | ||| |||| || | Sbjct 14491850 TGGGCCTCGCTCTGCCTCTGCTCATCATGACCATCTGCTACACCGGAATCATCAAAACGC 14491909 Query 176926 TGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGG 176985 || | ||| |||||| ||| | |||||||| |||||| ||||||| ||||||||||||| Sbjct 14491910 TGCTCAGGTGCCCCAACAAAACAAAGTACAAAGCCATCCGGCTCATTTTTGTCATCATGG 14491969 Query 176986 TGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACG 177045 ||| || ||| |||| ||| |||| |||||| | ||||| | || ||| | ||||| | Sbjct 14491970 TGGTCTTTTTCATTTTCTGGGCACCTTACAACCTGGTTCTTTTTCTTTCTGCTTTTCAAG 14492029 Query 177046 CAACCCTTCTTAACCTGCAG-TGTGCATTGAGCAGTA---ACTTGGACATGGCTCTGCTG 177101 | | |||| | |||| |||| |||||| | | |||||| |||| || | Sbjct 14492030 CGA-TCTTCCTGGAGAGCAGCTGTG---AGAGCAGCAAGCAGTTGGACCTGGCCAGGCAG 14492085 Query 177102 ATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTG 177161 | ||| | | || |||| ||||| ||| ||||||| | ||||| || ||||| Sbjct 14492086 GTGACAGAGGTGATCACCCACACCCACTGCTGCGTCAACCCCATCATCTATGCCTTCGTA 14492145 Query 177162 GGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCT 177220 || ||||| || ||||| ||||| ||||||| |||||| | |||||||||||||| Sbjct 14492146 GGCGAGAAATTCCAGAAG-TACCTGCACCACTTTTTCCACCGGCATGTGGCCATCTACCT 14492204 Query 177221 CTGCAAGTACATCCCCTTCCT 177241 |||| |||||||| ||||| Sbjct 14492205 GGGCAAATACATCCCGTTCCT 14492225 Score = 178 bits (196), Expect = 2e-39 Identities = 136/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| |||| ||||||||| ||||||| |||||||| |||||||||||| Sbjct 61685973 AGGCCGGTGACGTGCGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 61686032 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||| ||||| | |||||||||||||||||| |||||||| | || Sbjct 61686033 ACGCCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 61686092 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| ||| ||||| || ||||| ||||| Sbjct 61686093 ACGTAGAACTGGCAGAGGGCATGGCACGGGGGCAGCGCCAT 61686133 >seq16 Length=84478945 Score = 152 bits (168), Expect = 6e-32 Identities = 125/151 (83%), Gaps = 7/151 (5%) Strand=Plus/Minus Query 138090 CAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCCTTTTCCTG 138149 |||||||| ||||||||| || || |||||||||||||||||||| | ||| ||| Sbjct 65584720 CAGCCTCAGCCTGAGGGTCTTCAGGTTTTCCCCCAGGGAGTTCACGTGCTCC-----CTG 65584666 Query 138150 GTCGGTG--CTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGGATCATC 138207 | | || ||||||||||| || || |||||||| |||| ||||||||||||||||||| Sbjct 65584665 ATGGCTGGACTGTGGTTCTCAGCTTGCGGCATCACGTCCTTCAGGTAAAACTGGATCATC 65584606 Query 138208 TCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 || |||| ||| ||||| ||||||||||||| Sbjct 65584605 TCCGACAAGGCTTGGCATCCCAGGTAACCCT 65584575 Score = 100 bits (110), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 137924 AGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGC 137983 || |||| ||||| | |||||||||| ||||||||||| ||||||||||||||||| | Sbjct 65586837 AGCTTTTTATCTTCATTGTCATGTAGGTTTCTATGTAGTTGATGAAGATGTCAAACTCAC 65586778 Query 137984 TCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 ||||||| |||||||| |||| || || |||| Sbjct 65586777 TCATGGCTTTGTAGACGCCTTCCTCTTGCAGCT 65586745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 138015 CTTGCTGAAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAA 138074 |||||||||||||||||||||||||||||| ||||||||||| || || ||||| || || Sbjct 65585754 CTTGCTGAAGGCGCTCTTCACCTGCTCCACTGCCTTGCTCTTGTTTTCACAGGGGAGAAA 65585695 Query 138075 TCTGTG 138080 || ||| Sbjct 65585694 TCGGTG 65585689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590052894513640