Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq22 466 2e-126 seq9 316 2e-81 seq12 136 5e-27 seq181 93.3 5e-14 >seq22 Length=111700775 Score = 466 bits (516), Expect = 2e-126 Identities = 434/550 (79%), Gaps = 1/550 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| | |||||||||||| | | | | ||| || ||||| |||||||||||||| Sbjct 61957000 AGCAGGGCTTGGATGTCGGGCTCGATGTCGATGGTGGGGAAGCGGCGGCTGTACCTGCGC 61956941 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || ||| || | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 61956940 ACCGGGACGCCATCGGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAAACGTCGTTGCGG 61956881 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| |||| || ||||||| ||| ||||| | ||||||||| Sbjct 61956880 CACACCGGGGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCAGTGGGGTCGTCGCTG 61956821 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||||||||| || ||||||||||||||||| || ||| | || || || ||| Sbjct 61956820 GGCGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGCGGGTGCGCCTTGGCGCCATTCACC 61956761 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||| ||||||||| ||||| |||||||| ||| ||||| ||||| | ||| Sbjct 61956760 TCGCACTTCTGGAAGAGCATGAAGTTGGGCTCGAACCCGCCTCCAGGCCGGACATACTTG 61956701 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| || ||||| |||||| |||||| ||||| || || |||||||| || ||| Sbjct 61956700 AGGGAATTCAGAATCTCCTCATTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCATGGG 61956641 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || || ||||| |||| ||||| | || |||||| ||||||||||||||||| ||| Sbjct 61956640 AAGCCGAGCACGGCCAGGCCCCGGGGCCCGAGGCGCTCTTGCAGCTCGTTCATCTGGGTG 61956581 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || |||| |||||| | |||||||| ||||| || ||||| ||||||| ||| |||| Sbjct 61956580 TAGTCCCAGACCGTAGTGCCTCAGAGCGACGCCACATTCTCAATGAGCAGCACCTTGCCC 61956521 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | |||| | | ||| || || || | || | |||| | |||||||||| |||| Sbjct 61956520 CGCAGGGAGCCCAGGTTCATGGGCTCCCCGCAGGCCAGCGGGTGCGCTGAGAAGGAGTAC 61956461 Query 83597 ACAGATCTGG 83606 ||||| |||| Sbjct 61956460 ACAGA-CTGG 61956452 >seq9 Length=116251907 Score = 316 bits (350), Expect = 2e-81 Identities = 273/338 (81%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| | |||||||||||| | | | | ||| || ||||| |||||||||||||| Sbjct 16889703 AGCAGGGCTTGGATGTCGGGCTCGATGTCGATGGTGGGGAAGCGGCGGCTGTACCTGCGC 16889762 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || ||| || | ||||||| |||||||||||||||||||| |||||||| ||| Sbjct 16889763 ACCGGGACGCCATCGGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAAACGTCGTTACGG 16889822 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| |||| || ||||||| ||| ||||| | ||||||||| Sbjct 16889823 CACACCGGGGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCAGTGGGGTCGTCGCTG 16889882 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||||||||||||||| || ||||||||||||||||| || ||| | || ||||| ||| Sbjct 16889883 GGCGCCGGCAGGGCCTCCCGCAGGAAGGCGAAGAGCGGGTGCGCCTTGGCGCCGTTCACC 16889942 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||| ||||||||| ||||| |||||||| ||| ||||| ||||| | ||| Sbjct 16889943 TCGCACTTCTGGAAGAGCATGAAGTTGGGCTCGAACCCGCCTCCAGGCCGGACATACTTG 16890002 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||||| || ||||| |||||| |||||| ||||| Sbjct 16890003 AGGGAATTCAGAATCTCCTCATTCTTGGCGTTCTCCTG 16890040 Score = 183 bits (202), Expect = 4e-41 Identities = 171/216 (79%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 16890286 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCCGGGGCCCGAGGC 16890345 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || ||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 16890346 GCTCTTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTAGTGCCTCAGAGCGACGCCA 16890405 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | |||| | | |||| || || || |||| Sbjct 16890406 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGTTCACGGGCTCCCCGCCGG 16890465 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGG 83606 | |||| | |||||||||| ||||||||| |||| Sbjct 16890466 CCAGCGGGTGCGCTGAGAAGGAGTACACAGA-CTGG 16890500 >seq12 Length=155355395 Score = 136 bits (150), Expect = 5e-27 Identities = 193/266 (73%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| || ||| Sbjct 95166257 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTGC 95166199 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 95166198 TGGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 95166139 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | || |||| ||||| Sbjct 95166138 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTGATCCGCCACTAC 95166080 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| ||||| |||| ||| ||||| ||||| |||| | ||||| ||| Sbjct 95166079 GTGCAGCTGCTGTACCCCCGGGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGTGGGC 95166020 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 95166019 AAACTGGACGAGCGCTGCCGGCGCCG 95165994 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 49919 TCCTCTCCCGGGGAGCTGGCGGTGCTCCTACTGCACAAGGTCTTCCAGGAGCTCTTTGAC 49978 || || ||||| ||| | || || |||| |||||| | |||||| ||||||||||||| Sbjct 95166718 TCGTCGCCCGGCGAGTTCGCCGTCTTCCTGCTGCACCGGCTCTTCCCGGAGCTCTTTGAC 95166659 Query 49979 GCGCGCCAGCTGCGCC-GCTGCTACAGCTGCTACGGCGACGGGCGCACGCATTGTCTGGA 50037 ||| ||||| | || | |||||||||||||||||||| ||| ||| ||||| Sbjct 95166658 CACCGCAAGCTGGGGGAGCAG-TACAGCTGCTACGGCGACGGCGGCAAGCAGGAGCTGGA 95166600 Query 50038 CCCTGCGCGCCTGCAACTGATCCGGCACTGCGTGGCGCTTTGCTTCCC 50085 ||| | | ||||| | ||||| ||| | || | | | |||||| Sbjct 95166599 CCCGCAGAGGCTGCAGATCATCCGCAACTACACGGAGATCTACTTCCC 95166552 >seq181 Length=645466 Score = 93.3 bits (102), Expect = 5e-14 Identities = 230/345 (67%), Gaps = 12/345 (3%) Strand=Plus/Minus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115 ||| ||| || |||||| ||||| | | | ||| || || | ||||||| | || Sbjct 330584 GAGGAGGCGCTTGATGTCCGGCTCGATGTTGATGGTGGGGAAGGTGCGGCTGTAGCGTCG 330525 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 | |||| ||| || | || | | |||||||||||||||||||||||| || ||| Sbjct 330524 GAAGGGCTCGCCCTCCGGCCCTATGAGGAACTTCTCGAAGTTCCAGGCCACATCCGAGCG 330465 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 || ||| || |||| |||| || |||||| ||| ||| | | ||||||| | Sbjct 330464 GCGCACGGGGCTCCAGATGATGAACTTGGGGTCCGTCATGAGGGAAAACGGGTCGTCG-T 330406 Query 83236 AGGCGCCGGCAGGGCCTCTCGT-----AGGAAGGCGAAGAGCGGATG-TGCCCTTGCACC 83289 || || ||||| || || ||| ||| ||||| || || || ||| || Sbjct 330405 GGG----GGTAGGGCAGCTTGTCCTTGAGGTAGGTGAAGACGGGGTGCTGGTTCTGC-CC 330351 Query 83290 GTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGAC 83349 ||| ||||||||||||| || ||| | ||| | |||| | | || ||| || || || Sbjct 330350 GTTCACCTCGCACTTCTGGACGAGAGTGAAGGTGGGCTGGTACCCACCCCCGGGGCGCAC 330291 Query 83350 GTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || ||| || || |||||| ||| ||| ||| ||||| Sbjct 330290 GTACTTGAGACTGTTCAGGATCTCCTCATCCTGACAGTTCTCCTG 330246 Score = 86.0 bits (94), Expect = 8e-12 Identities = 111/151 (74%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| || ||||| || ||||| ||||| | || | ||| | Sbjct 327730 CCTGATGTCCAAACTGGTTGCAAGGGAAGCCGAGCACCACCAGGCGCCTGGGG--TAG-C 327674 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||||||||| | ||| ||| | |||||| ||| | |||||||| || || | Sbjct 327673 GGCACTGCAGCTCGTTGAGCTGGGTGAAGTCCCGGGTGGTGGTGCCTCAGAGAGAGGCCA 327614 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | ||||| || |||| ||| |||||| || Sbjct 327613 CATTCTCAATCAGCACCGCCCTGCCCCGGAA 327583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608772136119640