Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq107 259 3e-64 seq9 86.0 4e-12 >seq107 Length=1146635 Score = 259 bits (286), Expect = 3e-64 Identities = 526/775 (68%), Gaps = 11/775 (1%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 ||||||||||| |||||| || | || | ||||| || || || || || Sbjct 529598 TAAACAGCCATCTCCATTTTAATAGTTGGATGTGGGTTGTACCCTTTCATCTGAAAATCT 529539 Query 96958 TTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTT-AGTGTTGGGAAAGG 97016 | ||||| ||||||||||| | ||| |||| | | | ||| || | |||||||| Sbjct 529538 TCAGCTTTGAAATCATCAATCGTCTCAACTTTTC--GAAGATTTTGAGCTTCGGGAAAGG 529481 Query 97017 CCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGC 97076 || || |||| |||||| | | |||| |||||||| |||| ||||| || || Sbjct 529480 TCTTGGTTCTCGCTGAAGCTGAGTTTTCAGAGGCTCAATGTGGTTCAGGTAAATATGGGC 529421 Query 97077 ATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACA 97136 |||||| ||||| || | ||| || || || | | |||||||| ||||||| | Sbjct 529420 ATCTCCCAAAGTATGTACAAAATCACCTGGCTTCAGGCCGGTGACATGCACGATCATGTA 529361 Query 97137 AGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCT 97196 || | | | |||||| || ||||| || ||||| || || | ||| || | || || Sbjct 529360 GGTGAGCAAGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCTCATGTCTCCCGACCT 529301 Query 97197 TTGATATAACTGACAGGAAAGCTTTCCAT-CACACACATAAAACTGACTCAATACATGAC 97255 ||| || | ||| ||||| |||| |||| ||| ||| || ||||| | | |||| | Sbjct 529300 TTGGTACAGCTGGCAGGACAGCTCCCCATTCAC-CACGTAGAACTGGCAGAGGGCATGGC 529242 Query 97256 AGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTC 97315 | ||||||| |||||| |||| ||| | ||| || |||||||| | ||||||| Sbjct 529241 ATGGGGGCAGCGCCATCAGAGGAAGGTCTTTGGGATTTCAGGCACACATGATGATTCTTC 529182 Query 97316 TATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTC 97375 | || ||||| || | ||||||| || | | || | ||| || || |||| | Sbjct 529181 TGTCATCAGGGTTGGTTTTGATGGTATCGATCACTTTCTGCAGTTGGTCTACTCCTTGAC 529122 Query 97376 CACCATAATT---GTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATC 97432 | ||||| || |||| ||| |||||||| |||||||||||||| ||||| | Sbjct 529121 CTGAATAATCTGAGTCCTTAT---CTTTGTATTCTGCACCAAAATGCCTCCACTGGAAGC 529065 Query 97433 CATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGG 97492 ||||||| || || ||||| ||||||| ||| |||| || || | || ||| || Sbjct 529064 CATAAACTGGACCCAGGTCCCCTTCTTGTCTGGTGGAGAATCCCAGTCTGTCCAAAAAGT 529005 Query 97493 ACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAG 97552 | ||| |||| |||||||| || | ||| || | | || ||||| | | Sbjct 529004 CTCGGGATGCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGCATTTG 528945 Query 97553 TAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAG 97612 | ||||| |||||||||||| ||| || |||| ||||| |||| ||||| | || | Sbjct 528944 TGGATCCCTTGATAAACCACAGCAACTCCTCCAAGACACCCTTCCAGAATACACGTTTGG 528885 Query 97613 TTGTTAAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCATTCCAAAAAC 97667 |||| | |||||||| || | | | |||||| | |||||| || || || Sbjct 528884 TTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCACACCTGCATGCCGAACAC 528830 >seq9 Length=116251907 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||| |||||||||||||| ||||| |||||||| || || ||||| ||||||| | Sbjct 61690125 TATTCTGCACCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCTTCTTGT 61690184 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 || |||| || || | || ||| || | ||| |||| |||||||| || | | Sbjct 61690185 CTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATGCATTGGCATCCCAGATTTTC 61690244 Query 97522 ACACC 97526 || || Sbjct 61690245 ACTCC 61690249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346770302140370