Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq15 104 3e-17 seq7 93.3 6e-14 seq9 87.8 3e-12 seq19 86.0 9e-12 seq13 86.0 9e-12 >seq15 Length=109054052 Score = 104 bits (114), Expect = 3e-17 Identities = 189/274 (69%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| ||||| |||| |||| ||||||| | |||| || ||| ||| | || | Sbjct 46625434 TTCCTTCTGGATGCTATGGAAGAATAGCTCCACGTTCTGGCTTGGCTGCAAAATACTTCA 46625493 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || |||||||||||||||||||| || || |||| | Sbjct 46625494 TAGATGTGGGAGCTGGTGTTATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTATTGT 46625553 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | || ||| | ||| | | || | || || ||||| | || | || | Sbjct 46625554 TTAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGACAGAATTGCACAGCTCATTT 46625613 Query 10609 GTGAAAAAATTTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCA-GAAACAAAAAGA 10667 ||||| ||||| ||||| |||| | |||| | ||||| | || || ||||| Sbjct 46625614 GTGAACGGATTTTTTATCCAGAAATAGAAGAAGTTCA-AGTTTTGGATGACACTGAAAGA 46625672 Query 10668 TCTGATTTTGGTTTTGGATCTACTGGTTATAATT 10701 || |||||||| |||||||| | |||| Sbjct 46625673 GGTGCAGGAGGTTTTGGTTCTACTGGGAAGAATT 46625706 >seq7 Length=173684459 Score = 93.3 bits (102), Expect = 6e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTC 146117 |||||| || || | || | |||||| || ||| || || || || || || | ||| | Sbjct 2561101 AAGTCTCAACACAAGGTGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGATAAAGTCC 2561159 Query 146118 TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTT 146177 | ||| || | ||| || ||||||||||||| |||||||||||| ||||||||||||| Sbjct 2561160 ATCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTT 2561219 Query 146178 CTTTATCTTG 146187 | ||||| || Sbjct 2561220 CCTTATCCTG 2561229 >seq9 Length=116251907 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || || || || || || |||||| | ||| || |||| || |||||||||| Sbjct 47674488 CTTTTGA-ATGTTGTAGTCAGATGCAGTTCTTCCATCTTCCCATTGCTTGCCAGCAAAAA 47674546 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| |||||||||| ||||||||||| || |||||||| Sbjct 47674547 TCAATATTTGCTGATCAGGAGGAATTCCATCCTTATCTTG 47674586 >seq19 Length=57279966 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | | |||| || || | || | |||| | |||| || || || || || || Sbjct 43334563 CCACCACGAGGTCTCAACACAAGGTGAAGAGTAACTCCTTTTGA-ATGTTGTAGTCAGAT 43334505 Query 146111 AGAGTTCTG-CTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| ||| | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 43334504 AAAGT-CTGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 43334446 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 43334445 AATTCCTTCCTTATCCTG 43334428 >seq13 Length=143360832 Score = 86.0 bits (94), Expect = 9e-12 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 146080 AGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTC 146138 |||||| || ||| || || || || || || | ||| | | ||| || | ||| || | Sbjct 88039075 AGTAGACTCCTTTTGA-ATGTTGTAGTCAGATAAAGTCCGTCCATCTTCCAGTTGCTTGC 88039017 Query 146139 CAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||| |||||||||||| |||||||||||||| ||||| || Sbjct 88039016 CAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 88038968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743496277886720