Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3 102 8e-17 seq119 89.7 5e-13 >seq3 Length=155691105 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| |||| | || ||||||||| | | | | |||||||| | Sbjct 117727922 TTTAAAAATCTGCGTCTAAGGTGAAGACATTATCTGTGGTTTCCGCCATAACTGCAAAAC 117727981 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| |||||||| ||||| |||| Sbjct 117727982 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 117728041 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 |||| |||||||||||||||| || Sbjct 117728042 CCATGAAATCAAAAGGATTTTCTG 117728065 >seq119 Length=1067461 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || ||||| || || | ||| || || || ||||| || ||||| ||||||||||| || Sbjct 31899 TCATCCCTGCTAATAAGCTCATTGGAGAACGTAAGCCCGGGCATCAGTCCTCGTTTCTTG 31840 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| || || | ||||| |||||||| ||||| || ||||| || || ||||| || Sbjct 31839 AGCCAGAAAATCGACGCAAAAGAACCAGAGAAGAAGATGCCTTCCACCGCAGCAAAGGCT 31780 Query 16379 AC 16380 || Sbjct 31779 AC 31778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462493262482600