Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq17 1404 0.0 seq1 105 5e-18 seq12 86.0 4e-12 >seq17 Length=85008467 Score = 1404 bits (1556), Expect = 0.0 Identities = 1315/1668 (79%), Gaps = 46/1668 (3%) Strand=Plus/Minus Query 107136 AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCA 107195 ||| || |||||||| ||| || |||| ||| ||| | |||| | || | ||| || Sbjct 12777159 AGGCTCCTAGGCAGGTCTTTACCGAGGGTATGCGTCCAGAGAACAAATACACTTTTGCCT 12777100 Query 107196 TCACTCTGGAGTTGAACTTGA--------------TGTTCTGGATTAGTTTGTAATTAAA 107241 ||| | ||||||| ||| | ||||| || ||||||||||| | | Sbjct 12777099 TCAGTTCAGAGTTGAGCTTCACATTCCTGGGTCTGTGTTCGCGACTAGTTTGTAATCAGA 12777040 Query 107242 GGCATTTTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCTCC 107298 ||| |||||||| || |||||| ||||||||| |||| |||||||||||| | | Sbjct 12777039 GGCGTTTTGTTCCATCAAAGGATTCCGTCCTCCTCCTCCTTCTCTGTGCCCAAACGCCAC 12776980 Query 107299 TGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATC 107358 | |||||| ||||||||||| || ||||| ||| || |||||| ||| | Sbjct 12776979 AGCAATCCCATTCCATGAAGATGACTCAGTGGAGGAAA---CTCTGCCGGCAGTGTCACC 12776923 Query 107359 TGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGT 107418 | |||| |||||| |||||| ||||||||||| |||| || ||||||||||| ||||| | Sbjct 12776922 TTTGGGTCCTGGGGTGCTATCTGCTGCTGGCCATTGTCTCCCTGAGACTTTCTCTCAGAT 12776863 Query 107419 TTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGG-GACTTCCAGAGTCAGCACTGT 107477 |||||||| | || | || | ||||| |||||| |||||| |||| ||| ||||| Sbjct 12776862 GGAAATGTGACTTTGAGCACCTGTACCTGGACTCCAGGCGACTTC-AGAGCCAGTACTGT 12776804 Query 107478 AGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGG 107537 |||||||| |||||||| |||||||||||| |||||||| ||||||||||| || ||| Sbjct 12776803 AGGGACATCTTGTACAAGTCCCTGAAGCTGCCGGCAAAGAGCTCCATCAACTGCTCGGGG 12776744 Query 107538 ATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAG 107597 |||| ||||| |||||||| || ||| ||||||| | | | || || || | ||| Sbjct 12776743 GTCACCCGAGGAGACCAGGAGGCGGTGATCCAGGCTGTTATCAATAATCTAGAGATCAAG 12776684 Query 107598 AAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGC 107657 || || ||| |||||||| | | | |||||| || | |||||| ||||||||||| Sbjct 12776683 AAGAAACGGGAACCTCTCACAGCTGCTCACTACCTCGACCTGACCAGAAACTGTGAGCGC 12776624 Query 107658 TTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCC 107717 || ||||| | |||||||||||| |||||| || || ||||||||| |||| ||||| Sbjct 12776623 TTTAAGGCTGAGAGGAAGTTCATAGTGTTCCCCCTAAGCAAAGAAGAGTTAGAGTTCCCA 12776564 Query 107718 ATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCC 107777 ||||||||||| |||||||| |||||||||||||| ||||||||| ||||| |||||||| Sbjct 12776563 ATTGCCTACTCTATGGTGGTTCATGAGAAGATTGAGAACTTTGAAAGGCTGTTGCGAGCC 12776504 Query 107778 GTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTC 107837 |||||||| ||||||||||||||||||||||||||||||| ||||||| |||| | |||| Sbjct 12776503 GTGTATGCTCCTCAGAACATATACTGTGTCCACGTGGATGCGAAGTCCTCAGAAAGTTTC 12776444 Query 107838 AAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTG 107897 ||||| || || |||||||||| ||| ||||||||||| |||||||| |||||||| ||| Sbjct 12776443 AAAGAAGCAGTTAAGGCCATTACTTCATGCTTCCCCAACGTCTTCATAGCCAGTAAATTG 12776384 Query 107898 GTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGAC 107957 || | ||||||||||||||||||| || ||||| |||||||||||||| ||||||||| Sbjct 12776383 GTTTCTGTGGTTTATGCCTCCTGGTTAAGGGTGCAGGCTGACCTGAACTGCATGGAAGAC 12776324 Query 107958 TTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017 ||||| |||||| | ||||||||||| ||||| ||||||||||| ||||| |||||||| Sbjct 12776323 TTGCTGCAGAGCCCGGTGCCATGGAAATACTTCCTGAATACATGTGGGACGGACTTCCCT 12776264 Query 108018 ATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATG 108077 ||||| ||||||||||||||||||| |||||||||| ||||||| || |||||||||||| Sbjct 12776263 ATAAAAACCAATGCCGAGATGGTCCGGGCCCTCAAGCTGTTGAATGGGAAGAACAGTATG 12776204 Query 108078 GAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACA 108137 ||| | |||||||| | ||| |||||| | | ||||||||||| | ||||||| ||| | Sbjct 12776203 GAGACAGAGGTACCCACGGAGGCCAAAAGATACCGCTGGAAATATCACTATGAGTTGAAA 12776144 Query 108138 GACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTC 108197 |||||| |||| |||| || || ||| |||||||||||| ||||| || | |||||| Sbjct 12776143 GACACATTGTATATAACCAACAGGAAGAAAGACCCTCCCCCTTATAATCTAACTATGTTC 12776084 Query 108198 ACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCT 108257 || || ||||||||||| ||||| ||| ||| || |||| ||||||||| ||||| Sbjct 12776083 ACGGGAAATGCCTATTTCGTGGCGTCTAGAGAATTCATCCAGCATGTCTTAACGAACCCC 12776024 Query 108258 AAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGG 108317 ||||||||| |||| |||| |||| |||||||||||||||||||| || || |||||| Sbjct 12776023 AAATCCCAAGAACTGATTGAGTGGGCAAAAGACACCTATAGCCCCGATGAGCATCTCTGG 12775964 Query 108318 GCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCAC 108377 || ||||||||||| || || ||||||||||||| || ||| |||||| ||||| | || Sbjct 12775963 GCTACCCTTCAGCGCGCGCCATGGATGCCTGGCTTTGCTCCCTGCCACCGCAAGTTTGAC 12775904 Query 108378 ATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTC 108437 |||||||| ||||| ||||| |||||||| ||||||||| | |||| |||||||||||| Sbjct 12775903 ATCTCAGATATGACCGCCATTGCCAGGCTTGTCAAGTGGGCGGACCATGAGGGAGATGTC 12775844 Query 108438 AGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTAC 108497 | ||| || ||||||||||| |||||||| ||||| | | ||||| |||| || || Sbjct 12775843 ACTGCGGGTGCACCTTATGCACCTTGCTCTGGGATCCACCAGCGGGCCGTCTGTATCTAT 12775784 Query 108498 GGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| | || |||||| | ||||| || |||||||||||||| ||||| |||||||| ||| Sbjct 12775783 GGGACTGGAGACCTGCATTGGATACTTCAGAACCATCACCTGTTGGCCAACAAGTTCGAC 12775724 Query 108558 CCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATC 108617 || | |||||||| || ||||| |||||||||||||||||||||||| | ||||||||| Sbjct 12775723 CCCAAAGTGGATGACAATGTCCTTCAGTGCTTAGAAGAGTACCTACGTTACAAGGCCATC 12775664 Query 108618 TATGGGACTGAACTTTGAGCTGCACTGTG----------GGCCAGGGACTGTGCCAAC-- 108665 |||| ||||||||| |||| ||||||| |||| || ||| ||| Sbjct 12775663 TATGAGACTGAACTCTGAGACACACTGTGAAAACGTTGCCCCCAGTGA-GGTGGGAACAT 12775605 Query 108666 ATGC-------CCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATC 108718 |||| |||| | | |||| || |||||||| || || ||| || ||||||| Sbjct 12775604 ATGCAAATGTGCCAGCACTTGCTGGAACCATGTGGGGT-GGAGAGCAGGACTTTGGAATC 12775546 Query 108719 CATGGCATCCCCCAGGGTCAGAGGGCTGCT-TTGATGGGGTCAGGATG 108765 |||| ||| |||| || || |||| ||| || |||||| ||||| Sbjct 12775545 CATGCCATTCCCCCAGGACACAGGG--GCTACTGCTGGGGTGCGGATG 12775500 >seq1 Length=194850757 Score = 105 bits (116), Expect = 5e-18 Identities = 191/274 (70%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 108288 GACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA-TGCC 108346 |||||||| ||||| || || | ||||||||||| | || | | ||| | | |||| Sbjct 62872810 GACACCTACAGCCCGGATGAGTATCTCTGGGCCACTATCCAAAG-GATCCCGGAAGTGCC 62872868 Query 108347 TGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 |||||| | |||| |||||| |||||| || | || |||||| || | ||||| Sbjct 62872869 GGGCTCTCTGTCCTTGAGCCAC---AAGTATGACTTGTCCGACATGCGCGCGGTTGCCAG 62872925 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 | | ||||||||||||||| || || ||||| || ||| ||||| || | ||||| Sbjct 62872926 GTTTGTCAAGTGGCAGTACTTTGAAGGCGATGTTTCCAAGGGCGCGCCCTACCCGCCCTG 62872985 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 ||| |||| | | || | ||| | | || || || ||| || ||||||| || Sbjct 62872986 TAATGGGGTCCACGTGCGCTCCGTGTGCGTGTTTGGAGCTGGCGACTTGAACTGGATGCT 62873045 Query 108524 CCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || || ||| | || || |||||||||||| Sbjct 62873046 GCGCAAGCACCACTTGTTTGCCAACAAGTTTGAC 62873079 Score = 95.1 bits (104), Expect = 8e-15 Identities = 229/343 (67%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| || | ||||| || || || || ||||| ||| | || Sbjct 62872207 CCGCTAAGTAAAGAAGAGGCGGAGTATCCCATAGCTTATTCTATTGTGGTTCATCACAAA 62872266 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| |||| || | ||| | || |||||||| | || || | Sbjct 62872267 ATCGAAATGCTTGACAGGCTCTTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATT 62872326 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| ||||| || |||| || ||||||| || | | ||||| Sbjct 62872327 CACGTGGACAAAAAGTCAGAGGAATCTTTTCTAGCTGCGGTCATGGGCCTGGCGTCCTGT 62872386 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || |||||| |||||||| || ||| | ||||| |||||||| ||| | Sbjct 62872387 TTCAGTAACGTCTTCGTGGCCAGTCAGCTGGAGACTGTGGTCTATGCCTCGTGGAGTCGG 62872446 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA--GTGCCATGGAAGT 107985 || || || ||||| ||||| ||| | ||| | || || || | | | | ||||||| Sbjct 62872447 GTTCAGGCCGACCTCAACTGCATGAAGGACCT-CTACA-AGATGAACGCGGACTGGAAGT 62872504 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 |||| | || ||||| | || ||||| || || ||||| Sbjct 62872505 ACTTGATCAACCTTTGCGGTATGGATTTCCCTATTAAAACCAA 62872547 >seq12 Length=155355395 Score = 86.0 bits (94), Expect = 4e-12 Identities = 199/296 (67%), Gaps = 12/296 (4%) Strand=Plus/Plus Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||| | || | |||||||| |||||||| | |||| | ||| | || || | Sbjct 4264281 ATGCCCC--AAAATGTCTACTGTGTGCACGTGGACGAGAAGGCAACAGGTGCATTTAAGG 4264338 Query 107842 AGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCC 107901 | || || || | | |||||||||||| | |||| |||| | | ||| | Sbjct 4264339 ACGCTGTGCAGCAGCTACTGAGCTGCTTCCCCAACGCCTTCCTGGCTTCCAGGATGGAGC 4264398 Query 107902 CGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGA-CTTG 107960 | || || || | | | ||||| |||| |||||||||||||| ||| |||| || | Sbjct 4264399 CAGTAGTCTACGGCGGCATCTCCAGGCTGCAGGCTGACCTGAACTGCATGAAAGATCTCG 4264458 Query 107961 ----CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCC 108016 ||||| || ||||| ||||||||| | | || || || ||| |||||||| Sbjct 4264459 TGGCCTCCA-AG----GTGCCCTGGAAGTACCTCATCAACACCTGTGGGCAGGACTTCCC 4264513 Query 108017 CATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072 | | || | ||| ||||| |||| | ||| ||| ||| || || ||||||| Sbjct 4264514 CCTGAAAAGCAACAGGGAGATCGTCCAGTACCTGAAGGGGTTCAAAGGGAAGAACA 4264569 Score = 82.4 bits (90), Expect = 5e-11 Identities = 198/295 (67%), Gaps = 10/295 (3%) Strand=Plus/Plus Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAA 107840 ||||||| ||||| | ||||||||||| ||||||| ||| | || | || ||| || Sbjct 4290616 ATGCCCC--AGAACGTCTACTGTGTCCATGTGGATGAAAAGGCGCCCGTCGAGTTT-AAG 4290672 Query 107841 GAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 || || || || | | |||||||||||| | |||| |||| ||| ||| Sbjct 4290673 GACGCTGTGCAGCAGCTACTGAGCTGCTTCCCCAACGCCTTCCTGGCTTCCAAGATGGAG 4290732 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 || || || || | | ||||| |||| |||||||||||||| || |||| || Sbjct 4290733 CCAGTAGTCTACGGCGGGATCTCCAGGCTGCAGGCTGACCTGAACTGCATCAAAGATCTG 4290792 Query 107961 CTCCAGAGCTCAGTG---CCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017 || | ||| | | || ||||||||| | || || || ||| ||||||||| Sbjct 4290793 CT---GGCCTCGGAGAGTCCCTGGAAGTACGCCATCAACACCTGTGGGCAGGACTTCCCC 4290849 Query 108018 ATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072 | || ||||| || || |||| | ||| ||| ||| || || ||||||| Sbjct 4290850 CTGAAAACCAACAGGGAAATCGTCCAGTACCTGAAGGGGTTCAAAGGGAAGAACA 4290904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348255043491234