Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq107 277 1e-69 >seq107 Length=1146635 Score = 277 bits (306), Expect = 1e-69 Identities = 517/757 (68%), Gaps = 2/757 (0%) Strand=Plus/Plus Query 20033 TGAGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAG 20092 ||||| |||||||||| | | || || ||||| ||||| ||||| || || | || | Sbjct 528858 TGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTATTCTGGAAGGGTGTCTTGGAGG 528917 Query 20093 AGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTA 20152 |||| | |||||||| || ||||| |||||| ||| || || || ||||| | Sbjct 528918 AGTTGCTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAACTGTCTTCCAAGGGAGTGA 528977 Query 20153 AGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTC 20212 | || ||| || ||| ||| | ||||| |||| ||||| || | | | Sbjct 528978 AAATCTGGGATGCCAATGCATCCCGAGACTTTTTGGACAGACTGGGATTCTCCACCAGAC 529037 Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| ||||| ||||||| || ||||| || || ||||| |||||||| || ||||| Sbjct 529038 AAGAAGGGGACCTGGGTCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGTGCAGAATACA 529097 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 || | | || || |||||| || ||||||||||| ||| | || || || || || Sbjct 529098 AAGATAAGGACTCAGATTATTCAGGTCAAGGAGTAGACCAACTGCAGAAAGTGATCGATA 529157 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 || ||||| ||||| | ||||||||||| || | || ||||| || | ||||| Sbjct 529158 CCATCAAAACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGAAATCCCAAAGACC 529217 Query 20393 TGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATG 20452 | ||| | ||||| |||| ||||| ||| || ||||| || ||||| | ||| | Sbjct 529218 TTCCTCTGATGGCGCTGCCCCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAATGGGG 529277 Query 20453 AATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATA 20512 | |||| || || |||| ||| | || | || ||| | ||||| || || ||||| | Sbjct 529278 AGCTGTCCTGCCAGCTGTACCAAAGGTCGGGAGACATGAGCCTGGGCGTGCCCTTCAACA 529337 Query 20513 TTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTG 20572 | || || ||||| |||| || || ||||| | ||||| || | | || | |||| Sbjct 529338 TCGCCAGCTATGCCTTGCTCACCTACATGATCGTGCATGTCACCGGCCTGAAGCCAGGTG 529397 Query 20573 ACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAAT 20632 | || || || || | ||||| || ||||||||||| || || || || ||| | ||| Sbjct 529398 ATTTTGTACATACTTTGGGAGATGCCCATATTTACCTGAACCACATTGAGCCTCTGAAAA 529457 Query 20633 TACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAG 20692 ||| | ||| |||||| || ||||| | | || | | ||||| ||| | Sbjct 529458 CTCAGCTTCAGCGAGAACCAAGACCTTTCCCGAAGC-TCAAAATCTTCGAAAAGTTGAGA 529516 Query 20693 ATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAA 20752 ||| | ||||| |||||||| |||||| | | |||| || || || ||| | | Sbjct 529517 CGATTGATGATTTCAAAGCTGAAGATTTTCAGATGAAAGGGTACAACCCACATCCAACTA 529576 Query 20753 TTCCAATGGAAATGTCTGTTTAATATATATTC-CAAT 20788 || |||||| ||| ||||||| | | | ||| |||| Sbjct 529577 TTAAAATGGAGATGGCTGTTTAGTGTGTTTTCGCAAT 529613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399168232356745