Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq15 91.5 1e-13 >seq15 Length=109054052 Score = 91.5 bits (100), Expect = 1e-13 Identities = 254/386 (66%), Gaps = 8/386 (2%) Strand=Plus/Minus Query 11559 aaaaaGTAACTTAT--ATTTTCCTTTATTATAAAAAACTATAATA--TCCCACTTGACCC 11614 |||||||| || | ||||||| || || | ||| | ||| ||||| | || || Sbjct 46625747 AAAAAGTATGTTTTTCATTTTCCATTCTTGGTATAAATTTCAATTCTTCCCAGTAGAACC 46625688 Query 11615 AAATCCATTATTATCTCTATTTGTACCATCTAAACATTTAACTTCTTTAATTTTTGGATA 11674 ||| || | |||| | || |||| ||| || |||||||| |||| |||||| Sbjct 46625687 AAAACCTCCTGCACCTCTTTCAGTGTCATCCAAAACTTGAACTTCTTCTATTTCTGGATA 46625628 Query 11675 TTCTACTTTTTCAAAAATAATTTGCGCCACTCGATCGCCTCTTTTAATATTAAATGTATT 11734 | |||| |||| | || || | || || || |||| | | ||| | | Sbjct 46625627 AAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTCACCCTTTTTGACTTCAAACTTTTC 46625568 Query 11735 TTTACCATTATTAATAAATATAACTCCAATGTTACCCCTATAATCTTCATCTATAACTCC 11794 ||| ||| ||||| |||| ||| |||| || || |||||||||||||||||||| || Sbjct 46625567 TTTGCCAAAATTAAACAATACAACACCAACATTTCCTCTATAATCTTCATCTATAACACC 46625508 Query 11795 TCCTCCTATATCTATGCCATAATATAACGAAAGACCAGACCTTGGCGCTATTCGTCCATA 11854 |||| | ||||||| || | | | | ||||| | ||| ||||||| |||||| Sbjct 46625507 AGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCCAGAACGTGGAGCTATTCTTCCATA 46625448 Query 11855 ACAtttttttGGAATAGATAAACTTATATCAGTTTTAACTAAAATTCTTTCT--TTTGAT 11912 ||| |||| || || || || ||||| || || |||||| | | | Sbjct 46625447 GCATCCAGAAGGAAGAGCTATCTGAATGTCCGTTTTCAC--AATGGCTTTCTCCATAGGT 46625390 Query 11913 TTAACGATATAATCATAAGCACTATA 11938 ||| |||||||||||||||| || Sbjct 46625389 GGTACGGTATAATCATAAGCACTGTA 46625364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482326058973880