Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq188 111 1e-19 seq19 107 2e-18 seq1 105 6e-18 seq7 91.5 1e-13 >seq188 Length=611413 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || || Sbjct 73884 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 73825 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || ||||||||| ||| | || |||||||| Sbjct 73824 TGACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 73765 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || ||||| || ||||| ||| ||||||| || || ||| || || Sbjct 73764 GCAGAGGCTGATATTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 73705 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || || || || || |||| || | |||||||| ||| Sbjct 73704 CATCCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGTCTGAGGGGAGGT 73656 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || || Sbjct 74112 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 74053 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || ||||||||| ||| | || |||||||| Sbjct 74052 TGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 73993 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| |||||||| || || ||| || || Sbjct 73992 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAA 73933 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 73932 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 73900 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || | || ||||| || |||||| |||| || || || Sbjct 74339 ATGCAGATCTTCGTGAAAACCTTAACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 74280 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||| ||| | || |||||||| Sbjct 74279 GACACCATCGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCCCCCGACCA 74221 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| |||||||| || || ||| || || Sbjct 74220 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAA 74161 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 74160 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 74128 >seq19 Length=57279966 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || | Sbjct 4087800 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGC 4087859 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||||||| | || ||||||||| Sbjct 4087860 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 4087919 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| ||||| ||| ||||||| ||| | || || ||| Sbjct 4087920 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 4087979 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || || || || ||||| || | ||||| || |||| Sbjct 4087980 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTA 4088028 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || ||||| | || || || || Sbjct 4088028 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 4088087 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||||||| | || ||||||||| Sbjct 4088088 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 4088147 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| ||||| ||| ||||||| ||| | || || ||| Sbjct 4088148 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 4088207 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || || || || ||||| || | ||||| || |||| Sbjct 4088208 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTA 4088256 >seq1 Length=194850757 Score = 105 bits (116), Expect = 6e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| |||||| || || ||||| | ||| || || || ||||| ||||| || | Sbjct 145039688 CCACCTCATCTTTGCTTGTATATTCTACTACTTCTGTGCACAGGTTGCTGCACTTGATGG 145039629 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | || | || ||||||||| || ||||| || ||||| |||||||||||||| || | Sbjct 145039628 TTCCAAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTAAGGGG 145039569 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || ||||| ||| ||||| ||||| || Sbjct 145039568 TACCTGTCTCTGTCTGAGACTCAATGATGGC 145039538 >seq7 Length=173684459 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || || || || ||||| |||| |||||||| || Sbjct 2561318 ATGCAGATCTTCGTGAAAACCCTTACGGG-AAGACCATCACGCTCGAGGTTGAACCCTCG 2561260 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| ||| |||||||| | || || || ||| Sbjct 2561259 GATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 2561200 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || |||||||| || ||||||| | ||| ||| | || || || Sbjct 2561199 CAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGA-TGGATGGACTTTATCTGACTACAA 2561141 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||| || || |||||||| || || | ||||| Sbjct 2561140 CATTCAAAAGGAGTCTACTCTTCACCTTGTGTTGAGACT 2561102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445748340888720