Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 120 4e-22 seq1 114 2e-20 seq15 105 8e-18 seq3 98.7 1e-15 seq119 87.8 2e-12 >seq4 Length=91394100 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | | ||| | ||||| || || ||||||||||||| ||| Sbjct 45012235 GTTACTTTCTATGATGTGTATGTTGTTCTGCAAGCCTTTATACTGACTACTGCAGTATTT 45012176 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| ||| |||||||||||| |||||||||||||| ||| ||| | |||| Sbjct 45012175 CTTGGTTTGACTGCATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 45012117 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || || ||||| ||||||||||| |||||||||| |||||||| || ||| Sbjct 45016583 GGATCTTTGGGTTTCATTTTTGCATTGACTTTGAACAGACATAAGCATCCCCTAAACCTG 45016524 Query 188438 TACCTACTTTGTGGATTT 188455 ||||| |||| ||||||| Sbjct 45016523 TACCTTCTTTTTGGATTT 45016506 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 188170 CGTGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGC 188229 || ||||||| |||||||| ||||||||||| | ||||| ||||| ||||||||||||| Sbjct 45021650 CGCGCTCCTCGATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCTTCTGCCAGCGTGC 45021591 Query 188230 ACATACGAATGG 188241 |||| || |||| Sbjct 45021590 ACATCCGGATGG 45021579 >seq1 Length=194850757 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| |||||||||||||| | || ||||| || | | Sbjct 145038472 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 145038413 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| |||||| | | ||||| ||||||| Sbjct 145038412 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCA 145038353 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 || |||| ||| || || | ||||||| || Sbjct 145038352 AGGCTCCAGGTAAATAGCAAATGCTCCAGGACG 145038320 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || ||||| | ||| || || || || || || | Sbjct 145043056 CATAGGTTTCATATGGGCCATGCTCCTTGGCTAGGTCACAGCTGGCTTCCAAGGCTCCAT 145042997 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||| | |||||| | ||| || || || || ||||| |||| Sbjct 145042996 AATAAATAGTTTCAAAGATTTGCTTATTCAACAATTGGGCCTCTGGACTCTCAAAAGGAT 145042937 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 145042936 ATCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGACGATGGC 145042877 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 145042876 GTTTATTTGA 145042867 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| || || ||||| ||||| || || || || || |||||||| | Sbjct 145049076 ACCTGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTAGTGTACGGTTCAATG 145049017 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 || |||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 145049016 GATTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTTGGCATCGGGGCAAGAAGTAAA 145048957 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 145048956 CTGTTTCTTATACCATA 145048940 >seq15 Length=109054052 Score = 105 bits (116), Expect = 8e-18 Identities = 238/355 (67%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 31300 CCTGTTGATCCAAACCCTTGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTCA 31359 || || || ||||| ||| | ||||| || || ||| | | ||| |||||||| Sbjct 46625698 CCAGTAGAACCAAAACCTCCTGCACCTCTTTCAGTGTCATCCAAAACTTGAACTTCTTCT 46625639 Query 31360 AGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTTACA 31419 | |||||||||| | || |||| | | || ||||| || ||||| || || | || || Sbjct 46625638 ATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTCACCCTTTTTGACT 46625579 Query 31420 TTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTCG 31479 | |||| | ||| ||| ||||| | | || || | ||||| ||||||||||| Sbjct 46625578 TCAAACTTTTCTTTGCCAAAATTAAACAATACAACACCAACATTTCCTCTATAATCTTCA 46625519 Query 31480 TCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGAGCT 31536 ||||| ||||| |||| | ||| || | |||| | || ||||| | |||||| Sbjct 46625518 TCTATAACACCAGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCCAGAACGTGGAGCT 46625459 Query 31537 ATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACTGTCGT 31596 ||||| |||||||| ||| | | || ||| || || || | | || | | Sbjct 46625458 ATTCTTCCATAGCATCCAGAAGGAAGAGCTATCTGAATGTCCGTTTTCA--CAATGGCTT 46625401 Query 31597 TCTCC--AGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCGGCAGC 31649 ||||| ||| || | |||||||| ||||| || |||| || || || || || Sbjct 46625400 TCTCCATAGGTGGTACGGTATAATCATAAGCACTGTACAGGTCGTAGCCCGCGGC 46625346 >seq3 Length=155691105 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | || || ||||| |||||||| ||||| || || | ||| || Sbjct 117739710 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATCAGACCTCTCTTCTTT 117739769 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| || |||||||| ||||||||||| Sbjct 117739770 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAGGC 117739828 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 ||||||||||| || ||||||||||||||||||||||| || || ||||| |||||| Sbjct 117747334 AAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAAA 117747393 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 ||||| || |||| ||| ||| | ||||| | | || ||| || |||| Sbjct 117747394 TATTTCTCATCTGATGTAAGTCTGTTCCAGTGAGGGAGATCCTTTGATA 117747442 >seq119 Length=1067461 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || ||||| | || || || ||||| || |||||||| || || || || | Sbjct 31901 CCTCATCCCTGCTAATAAGCTCATTGGAGAACGTAAGCCCGGGCATCAGTCCTCGTTTCT 31842 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || || || || || || || |||||||| ||||| || |||||||||| Sbjct 31841 TGAGCCAGAAAATCGACGCAAAAGAACCAGAGAAGAAGATGCCTTCCACCGCAGCAAAGG 31782 Query 33724 C 33724 | Sbjct 31781 C 31781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629792084514480