Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 185 1e-41 seq1 114 2e-20 seq15 96.9 5e-15 seq3 89.7 7e-13 >seq4 Length=91394100 Score = 185 bits (204), Expect = 1e-41 Identities = 160/196 (82%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCA-AAAGCTGTAACAGATGCAAGAACAGATTGATGATAT 9285 ||| || |||||| | |||||| ||||| ||||||| |||| ||| |||||||| |||| Sbjct 45007013 TTACTTTTTATTAACTGCTTCCAGAAAGC-GTAACAGGTGCAGGAATAGATTGATAATAT 45007071 Query 9286 CCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTG 9345 ||||||||| |||| | ||||||||||| |||||||| || || ||||| || || | Sbjct 45007072 CCAAGTAGAGGCTGATGGCAGCTAACACATACTCTTCAGGTGATAGTTTATGCATCAGAG 45007131 Query 9346 AGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCA 9405 |||| ||||||||||| |||||||| ||||| | |||||| |||| ||||| || ||||| Sbjct 45007132 AGTGGGTGTCATAGATGATGAATCCACAGAAAAGAAGGGCTCCAACAGCAGCCAAGACCA 45007191 Query 9406 GCTCCACTGTTTCACT 9421 ||||| ||| ||||| Sbjct 45007192 ACTCCATTGTCTCACT 45007207 Score = 161 bits (178), Expect = 1e-34 Identities = 107/119 (90%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| |||||||||||||||||||||| | ||||| Sbjct 45012117 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATATGCAGTCAAACCAAGA 45012176 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || || ||||||| ||| |||| |||||||||||||||||| Sbjct 45012177 AATACTGCAGTAGTCAGTATAAAGGCTTGCAGAACAACATACACATCATAGAAAGTAAC 45012235 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| |||||||| ||||| ||||||| ||||||||||| ||||||| Sbjct 45021579 CCATCCGGATGTGCACGCTGGCAGAAGCCACGCAGCTGCCGTAGTTGAAGTCATCCTCGA 45021638 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 | ||||||| || |||| || Sbjct 45021639 TCGAGGAGCGCGGGTAGCGG 45021658 >seq1 Length=194850757 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| |||||||||||||| | || | ||| |||| | Sbjct 145038472 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 145038413 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| |||||| | | ||||| ||||||| Sbjct 145038412 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCA 145038353 Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 || |||| ||| || || | ||||||| || Sbjct 145038352 AGGCTCCAGGTAAATAGCAAATGCTCCAGGACG 145038320 Score = 109 bits (120), Expect = 7e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 145027300 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTCGAGACAGCAATCCTTGCCGCCAGGA 145027241 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || ||||| | ||||| | || || ||| |||| || |||| ||| |||| Sbjct 145027240 TGGCATAGTCGGGATGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCCA 145027181 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 66966 ||| || || || |||||| | |||| |||||||| || ||||||| Sbjct 145027180 GTTCCACTGTGGTGACTCCACTGTATAAGCCTTGGATTACTTTCATAG 145027133 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| || || ||||| ||||| || || || || || |||||||| | Sbjct 145049076 ACCTGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTAGTGTACGGTTCAATG 145049017 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 || |||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 145049016 GATTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTTGGCATCGGGGCAAGAAGTAAA 145048957 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 145048956 CTGTTTCTTATACCATA 145048940 >seq15 Length=109054052 Score = 96.9 bits (106), Expect = 5e-15 Identities = 236/355 (66%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 33901 CCGGTTGATCCAAACCCTTGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTTC 33960 || || || ||||| ||| | ||||| || || ||| | | ||| ||||||| Sbjct 46625698 CCAGTAGAACCAAAACCTCCTGCACCTCTTTCAGTGTCATCCAAAACTTGAACTTCTTCT 46625639 Query 33961 AGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTTACA 34020 | |||||||||| | || |||| | | || ||||| || ||||| || ||| | || || Sbjct 46625638 ATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTCACCCTTTTTGACT 46625579 Query 34021 TTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCTTCG 34080 | || | ||| ||| ||||| | | || || | |||||| ||||||||||| Sbjct 46625578 TCAAACTTTTCTTTGCCAAAATTAAACAATACAACACCAACATTTCCTCTATAATCTTCA 46625519 Query 34081 TCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGAGCT 34137 ||||| ||||| |||| | ||| || |||| | || ||||| | |||||| Sbjct 46625518 TCTATAACACCAGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCCAGAACGTGGAGCT 46625459 Query 34138 ATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAATTGTCTT 34197 ||||| |||||||| ||| | | || ||| || || || | | || ||| Sbjct 46625458 ATTCTTCCATAGCATCCAGAAGGAAGAGCTATCTGAATGTCCGTTTTCA--CAATGGCTT 46625401 Query 34198 TCTCC--TGGAGGGATAGTATAATAATAAGCGCTATATAAATCATATCCGGCGGC 34250 ||||| || || | ||||||| |||||| || || | || || || ||||| Sbjct 46625400 TCTCCATAGGTGGTACGGTATAATCATAAGCACTGTACAGGTCGTAGCCCGCGGC 46625346 >seq3 Length=155691105 Score = 89.7 bits (98), Expect = 7e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 ||||||||||| || ||||| ||||||||||||||||| || || ||||| |||||| Sbjct 117747334 AAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAAA 117747393 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 36650 ||||| || | || ||| ||| | ||||| | | || ||| || |||| Sbjct 117747394 TATTTCTCATCTGATGTAAGTCTGTTCCAGTGAGGGAGATCCTTTGATA 117747442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658146135774440