Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq107 295 6e-75 seq9 149 5e-31 >seq107 Length=1146635 Score = 295 bits (326), Expect = 6e-75 Identities = 460/658 (70%), Gaps = 0/658 (0%) Strand=Plus/Minus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983 ||| || |||| |||||| ||||| ||||| || ||||| || || ||||| || || Sbjct 529453 CAGAGGCTCAATGTGGTTCAGGTAAATATGGGCATCTCCCAAAGTATGTACAAAATCACC 529394 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 || ||||||| ||||| || |||||| || || || | ||| |||||||||||||| Sbjct 529393 TGGCTTCAGGCCGGTGACATGCACGATCATGTAGGTGAGCAAGGCATAGCTGGCGATGTT 529334 Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103 || || || || |||| |||||| | ||||| |||||||||||||||||||||||||| Sbjct 529333 GAAGGGCACGCCCAGGCTCATGTCTCCCGACCTTTGGTACAGCTGGCAGGACAGCTCCCC 529274 Query 21104 CCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| ||||| || | | || || || || || |||||| | | ||||| Sbjct 529273 ATTCACCACGTAGAACTGGCAGAGGGCATGGCATGGGGGCAGCGCCATCAGAGGAAGGTC 529214 Query 21164 CGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATC 21223 ||| || || || ||||| | ||| | | || | || | || || ||| Sbjct 529213 TTTGGGATTTCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTATC 529154 Query 21224 CACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTA 21283 | ||| | |||| ||||| || || ||||| || | | ||| | |||| Sbjct 529153 GATCACTTTCTGCAGTTGGTCTACTCCTTGACCTGAATAATCTGAGTCCTTATCTTTGTA 529094 Query 21284 CTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCG 21343 || || |||||||| ||||||||||| || || || || ||||| || || || | | Sbjct 529093 TTCTGCACCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCTTCTTGTCT 529034 Query 21344 GTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTAC 21403 | ||| ||| | |||||||| | ||||| | | || ||||| ||||| || Sbjct 529033 GGTGGAGAATCCCAGTCTGTCCAAAAAGTCTCGGGATGCATTGGCATCCCAGATTTTCAC 528974 Query 21404 GCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTC 21463 || | |||||||| | | | ||||| ||| |||||||||||||||||||||| Sbjct 528973 TCCCTTGGAAGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAACTCCTC 528914 Query 21464 CACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTT 21523 || ||| ||| |||| || || | |||||| || | ||||||||| || || || ||| | Sbjct 528913 CAAGACACCCTTCCAGAATACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCT 528854 Query 21524 ATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTC 21581 || | |||| | |||||||| ||| |||||| |||||| | ||||||| || Sbjct 528853 GTAGCACACCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTCCTCCTTC 528796 >seq9 Length=116251907 Score = 149 bits (164), Expect = 5e-31 Identities = 138/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||||||| ||||||| || || || ||||| |||||||||||||| || | Sbjct 61685971 TCAGGCCGGTGACGTGCGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGG 61686030 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 61686031 GCACGCCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCA 61686090 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| ||||| || | | || || || || || |||||| | | ||||| Sbjct 61686091 CCACGTAGAACTGGCAGAGGGCATGGCACGGGGGCAGCGCCATCAGAGGAAGGTC 61686145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427759102981680