Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq188 109 5e-19 seq7 102 8e-17 seq19 98.7 1e-15 seq14 93.3 4e-14 seq13 89.7 5e-13 >seq188 Length=611413 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| || | ||| | || ||||| || || ||||| || ||| Sbjct 74112 GCCACCTCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 74171 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| ||||| || || ||| ||||||| | ||||| ||||| || Sbjct 74172 CAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGG 74231 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| ||| || | | || | ||||| |||||||||| Sbjct 74232 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 74291 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||| || || ||||| ||||| || ||||| Sbjct 74292 CTCGAGGGTGATGGTCTTGCCAGTTAAGGTTTTCACGAAGATCTGCAT 74339 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| || | ||| | || ||||| || || ||||| || ||| Sbjct 73884 GCCACCTCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 73943 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| ||||| || || ||| ||||||| | ||||| ||||| || Sbjct 73944 CAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGG 74003 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| |||||||||| Sbjct 74004 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 74063 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 74064 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 74111 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || ||||| | || ||||| || || ||||| || ||| || |||| Sbjct 73668 ACGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 73727 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || || ||| | ||||| | ||||| ||||| || ||||| || || Sbjct 73728 ATCTTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTT 73787 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||| ||||||||||||| | ||| | Sbjct 73788 GTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGAT 73847 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 73848 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 73883 >seq7 Length=173684459 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || ||||| | || ||||| || || ||||| || ||| || |||| Sbjct 24645088 ACGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 24645029 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| |||||||| | ||| ||||||| | ||||| || || || ||||| || || Sbjct 24645028 ATCTTCCAGCTGTTTGCTGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTT 24644969 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||| ||||||||||||| | ||| | Sbjct 24644968 GTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGAT 24644909 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 24644908 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 24644873 Score = 100 bits (110), Expect = 3e-16 Identities = 153/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| || | ||||| |||||||| ||||||||||| || || | || | || | | Sbjct 2561107 CAACACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCATCCA-T 2561165 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || || || |||||| | ||||| | ||||||||| ||||| || ||||| || | Sbjct 2561166 CTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 2561225 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | |||||| ||||| | ||| | ||| || | ||| || ||||| | || | | Sbjct 2561226 CCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGCGTGATGG 2561285 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || || | ||||| ||||| || ||||| Sbjct 2561286 TCTT-CCCGTAAGGGTTTTCACGAAGATCTGCAT 2561318 >seq19 Length=57279966 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || |||||||| || ||||| || || Sbjct 4088026 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4087967 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || || |||| || | ||||| |||||||| Sbjct 4087966 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGA 4087907 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || ||| || || | | || | |||||| ||||||||||| Sbjct 4087906 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 4087847 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 4087846 TCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4087800 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || |||||||| || ||||| || || Sbjct 4088482 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4088423 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || |||||| |||| || | ||||| || ||||| Sbjct 4088422 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 4088363 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || ||| || || | | || | |||||| ||||||||||| Sbjct 4088362 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 4088303 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | |||||||| || | || || ||||| || |||||| Sbjct 4088302 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 4088255 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || |||||||| || ||||| || || Sbjct 4088254 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4088195 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || || |||| || | ||||| |||||||| Sbjct 4088194 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGA 4088135 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || ||| || || | | || | ||||| ||||||||||| Sbjct 4088134 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4088075 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| || | || || ||||| || |||||| Sbjct 4088074 TCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 4088027 >seq14 Length=163896628 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCG 139607 ||||| || ||||| | || |||||||| | ||||| || ||| || |||| || Sbjct 150521863 ACGCAGGACCAAGTGCAGAGTGGACTCTTTCGGGATGTTGTAGTCGGACAGGGTGCGTCC 150521922 Query 139608 AGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667 | ||||| || || || |||||| ||||||| | ||||| | || || |||| || | Sbjct 150521923 A-TCTTCCAGGTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTAAGGGGGCGTGCCCTCCT 150521981 Query 139668 TGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 |||| ||| || || | | | | ||||| ||||||||||||| | ||| | Sbjct 150521982 TGTCCTGGATCTTCGCCTTGACGTTCTAGATGGTGTCACTGGGCTCCACCTCGAGGGTGA 150522041 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 150522042 TGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 150522079 >seq13 Length=143360832 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || || | ||| || | |||| |||||||| ||||||||||| || || Sbjct 88039104 CCCCCACGAAATCTCAACACAAGGTGAGGAGTAGACTCCTTTTGAATGTTGTAGTCAGAT 88039045 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| || || || |||||| | ||||| | ||||||||| ||||| Sbjct 88039044 AAAGTCCGTCCA-TCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 88038986 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||||||| ||||| | ||| | ||| || | ||| || || Sbjct 88038985 AATTCCTTCCTTATCCTGGATTTTTGCTTTTACATTTTCTATTGTATCCGAGGGTTCAAC 88038926 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | | | ||||| || | | ||||| | ||| || ||||| Sbjct 88038925 CTTGAGCATGATGGTCTTCCCCATAAGGGTTTTCATGAAGATCTGCAT 88038878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496043903207200