Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15 114 2e-20 seq1 107 3e-18 >seq15 Length=109054052 Score = 114 bits (126), Expect = 2e-20 Identities = 240/355 (68%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 47704 CCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTCC 47763 ||||| || ||||| ||| || ||||| || || ||| | | ||| ||||| || Sbjct 46625698 CCAGTAGAACCAAAACCTCCTGCACCTCTTTCAGTGTCATCCAAAACTTGAACTTCTTCT 46625639 Query 47764 AGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTACA 47823 | |||||||||| | || |||| | | || ||||| || ||||| || ||| | || || Sbjct 46625638 ATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTCACCCTTTTTGACT 46625579 Query 47824 TTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTCG 47883 | ||| | ||| ||| ||||| | | || || | ||||| ||||||||||| Sbjct 46625578 TCAAACTTTTCTTTGCCAAAATTAAACAATACAACACCAACATTTCCTCTATAATCTTCA 46625519 Query 47884 TCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGCT 47940 ||||| |||||| |||| | ||| || | |||| | || ||||| | |||||| Sbjct 46625518 TCTATAACACCAGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCCAGAACGTGGAGCT 46625459 Query 47941 ATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACTGTCTT 48000 ||||| |||||||| ||| | | || ||| || || || | | || ||| Sbjct 46625458 ATTCTTCCATAGCATCCAGAAGGAAGAGCTATCTGAATGTCCGTTTTCA--CAATGGCTT 46625401 Query 48001 TCTCC--TGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCGGCAGC 48053 ||||| || || | |||||||| ||||| || |||| || || || || || Sbjct 46625400 TCTCCATAGGTGGTACGGTATAATCATAAGCACTGTACAGGTCGTAGCCCGCGGC 46625346 >seq1 Length=194850757 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| |||||||||||||| | || ||||| |||| | || Sbjct 145038468 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACGCTGT 145038409 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| |||||| | | ||||| ||||||| || Sbjct 145038408 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCAAGGC 145038349 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 145038348 TCCAGGTAAATAGC 145038335 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| || || ||||| ||||| || || || || || || ||||| | Sbjct 145049076 ACCTGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTAGTGTACGGTTCAATG 145049017 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 ||||||||||| |||| || ||||||||||| || |||||||| || || | | |||| Sbjct 145049016 GATTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTTGGCATCGGGGCAAGAAGTAAA 145048957 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 145048956 CTGTTTCTTATACCATA 145048940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718239701135240